SRR23495434 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Ligilactobacillus murinus | Ligilactobacillus | 10.9132 |
| Prevotella heparinolytica | Prevotella | 10.1309 |
| Ruminococcus champanellensis | Ruminococcus | 6.1197 |
| Prevotella loescheii | Prevotella | 5.8168 |
| Muribaculum intestinale | Muribaculum | 5.6675 |
| Lactobacillus johnsonii | Lactobacillus | 5.4579 |
| Prevotella ruminicola | Prevotella | 4.3970 |
| Akkermansia muciniphila | Akkermansia | 4.1911 |
| Prevotella buccae | Prevotella | 3.7384 |
| Parabacteroides goldsteinii | Parabacteroides | 3.5072 |
| Prevotella fusca | Prevotella | 2.8071 |
| Prevotella brevis | Prevotella | 2.7106 |
| Lactobacillus taiwanensis | Lactobacillus | 2.6666 |
| Ligilactobacillus agilis | Ligilactobacillus | 2.5645 |
| Alistipes finegoldii | Alistipes | 2.5310 |
| Ligilactobacillus aviarius | Ligilactobacillus | 2.3331 |
| Alistipes putredinis | Alistipes | 2.0342 |
| Ruminiclostridium cellulolyticum | Ruminiclostridium | 1.7284 |
| Ruminiclostridium cellobioparum | Ruminiclostridium | 1.4761 |
| Ruminiclostridium hungatei | Ruminiclostridium | 1.3934 |
| Ligilactobacillus apodemi | Ligilactobacillus | 1.3652 |
| Ruminococcus flavefaciens | Ruminococcus | 1.2939 |
| Ligilactobacillus salivarius | Ligilactobacillus | 1.1233 |
| Alistipes dispar | Alistipes | 1.1224 |
| Alistipes senegalensis | Alistipes | 1.0790 |
| Prevotella corporis | Prevotella | 1.0457 |
| Ruminococcus gauvreauii | Ruminococcus | 1.0064 |
| Parabacteroides gordonii | Parabacteroides | 0.9648 |
| Ligilactobacillus animalis | Ligilactobacillus | 0.9218 |
| Prevotella oris | Prevotella | 0.8568 |
| Prevotella intermedia | Prevotella | 0.7992 |
| Prevotella buccalis | Prevotella | 0.7949 |
| Prevotella paludivivens | Prevotella | 0.7644 |
| Lactobacillus delbrueckii | Lactobacillus | 0.7493 |
| Prevotella melaninogenica | Prevotella | 0.7475 |
| Prevotella copri | Prevotella | 0.7437 |
| Lactobacillus acetotolerans | Lactobacillus | 0.6790 |
| Prevotella nigrescens | Prevotella | 0.6559 |
| Ligilactobacillus faecis | Ligilactobacillus | 0.5633 |
| Lactobacillus psittaci | Lactobacillus | 0.5384 |
Saved public metadata
{
"run_accession": "SRR23495434",
"study_accession": "PRJNA935668",
"sample_accession": "SAMN33322864",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "12047",
"base_count": "17468137",
"fastq_bytes": "16782636",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR234/034/SRR23495434/SRR23495434_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "9f8cb8119d282808e4ff4923ae3310e65ed4153a4d305b5248e0252b696de381",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1445,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 12047,
"reads_skipped": 7738,
"elapsed_seconds": 0.8909065469997586,
"reads_submitted": 12047,
"reads_after_filter": 12047,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}