SRR23495433 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Blautia producta | Blautia | 14.9686 |
| Prevotella heparinolytica | Prevotella | 10.3505 |
| Ruminococcus champanellensis | Ruminococcus | 5.6287 |
| Muribaculum intestinale | Muribaculum | 5.4241 |
| Ligilactobacillus murinus | Ligilactobacillus | 5.0847 |
| Prevotella ruminicola | Prevotella | 4.8131 |
| Lactobacillus johnsonii | Lactobacillus | 4.6540 |
| Prevotella loescheii | Prevotella | 4.4258 |
| Blautia hansenii | Blautia | 3.5718 |
| Prevotella buccae | Prevotella | 3.4389 |
| Prevotella fusca | Prevotella | 3.1756 |
| Prevotella brevis | Prevotella | 2.9737 |
| Akkermansia muciniphila | Akkermansia | 2.5597 |
| Blautia luti | Blautia | 2.4899 |
| Alistipes finegoldii | Alistipes | 2.2753 |
| Lactobacillus taiwanensis | Lactobacillus | 2.1766 |
| Ruminococcus gauvreauii | Ruminococcus | 2.1269 |
| Allobaculum stercoricanis | Allobaculum | 1.9025 |
| Neglectibacter timonensis | Neglectibacter | 1.7987 |
| Parabacteroides goldsteinii | Parabacteroides | 1.6603 |
| Alistipes putredinis | Alistipes | 1.5642 |
| Prevotella oris | Prevotella | 1.4534 |
| Blautia hominis | Blautia | 1.4135 |
| Ligilactobacillus aviarius | Ligilactobacillus | 1.2107 |
| Prevotella corporis | Prevotella | 1.1999 |
| Marvinbryantia formatexigens | Marvinbryantia | 1.1106 |
| Prevotella paludivivens | Prevotella | 1.0799 |
| Prevotella intermedia | Prevotella | 1.0609 |
| Blautia glucerasea | Blautia | 1.0082 |
| Lactobacillus delbrueckii | Lactobacillus | 1.0031 |
| Prevotella buccalis | Prevotella | 0.9363 |
| Lactobacillus gasseri | Lactobacillus | 0.7446 |
| Blautia faecis | Blautia | 0.7153 |
Saved public metadata
{
"run_accession": "SRR23495433",
"study_accession": "PRJNA935668",
"sample_accession": "SAMN33322865",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "12047",
"base_count": "17495085",
"fastq_bytes": "16659109",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR234/033/SRR23495433/SRR23495433_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "d4d0da6d3f9bc28f656679e4ee1867f2e7bbd97fcb0c5c10ee8b94e9365dde16",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1447,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 12047,
"reads_skipped": 9048,
"elapsed_seconds": 0.8322674760000837,
"reads_submitted": 12047,
"reads_after_filter": 12047,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}