SRR23495431 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Blautia producta | Blautia | 29.2381 |
| Clostridium phytofermentans | Clostridium | 10.7931 |
| Blautia hansenii | Blautia | 8.7064 |
| Blautia luti | Blautia | 7.6020 |
| Anaerostipes hadrus | Anaerostipes | 6.2516 |
| Muribaculum intestinale | Muribaculum | 5.1426 |
| Clostridium pacaense | Clostridium | 3.9275 |
| Parabacteroides goldsteinii | Parabacteroides | 2.6322 |
| Lactobacillus johnsonii | Lactobacillus | 2.5755 |
| Ruminococcus gauvreauii | Ruminococcus | 2.0615 |
| Ruminococcus champanellensis | Ruminococcus | 1.8747 |
| Blautia schinkii | Blautia | 1.8597 |
| Anaerostipes butyraticus | Anaerostipes | 1.7766 |
| Clostridium botulinum | Clostridium | 1.5828 |
| Blautia hominis | Blautia | 1.2809 |
| Akkermansia muciniphila | Akkermansia | 1.1455 |
| Blautia obeum | Blautia | 1.1174 |
| Blautia glucerasea | Blautia | 1.1071 |
| Alistipes finegoldii | Alistipes | 1.0968 |
| Marvinbryantia formatexigens | Marvinbryantia | 1.0577 |
| Lactobacillus taiwanensis | Lactobacillus | 0.9585 |
| Clostridium carnis | Clostridium | 0.8814 |
| Alistipes putredinis | Alistipes | 0.8436 |
| Neglectibacter timonensis | Neglectibacter | 0.7880 |
| Anaerostipes rhamnosivorans | Anaerostipes | 0.7424 |
| Clostridium sporogenes | Clostridium | 0.6337 |
| Lactobacillus delbrueckii | Lactobacillus | 0.6093 |
| Ligilactobacillus murinus | Ligilactobacillus | 0.6093 |
| Blautia hydrogenotrophica | Blautia | 0.5585 |
| Alistipes senegalensis | Alistipes | 0.5457 |
Saved public metadata
{
"run_accession": "SRR23495431",
"study_accession": "PRJNA935668",
"sample_accession": "SAMN33322867",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "12047",
"base_count": "17495378",
"fastq_bytes": "16516328",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR234/031/SRR23495431/SRR23495431_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "daaea67573852da490ed98e4735aa6e6b15806fc8a78456a874216b0335361a2",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1447,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 12047,
"reads_skipped": 7800,
"elapsed_seconds": 1.115176470999927,
"reads_submitted": 12047,
"reads_after_filter": 12047,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}