SRR23495429 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Blautia producta | Blautia | 25.7970 |
| Blautia hansenii | Blautia | 10.8186 |
| Lactobacillus johnsonii | Lactobacillus | 6.8856 |
| Enterocloster bolteae | Enterocloster | 5.7974 |
| Enterocloster clostridioformis | Enterocloster | 4.7774 |
| Blautia luti | Blautia | 4.5255 |
| Limosilactobacillus reuteri | Limosilactobacillus | 4.3572 |
| Ruminococcus champanellensis | Ruminococcus | 3.8628 |
| Muribaculum intestinale | Muribaculum | 3.5771 |
| Lactobacillus taiwanensis | Lactobacillus | 3.0650 |
| Bacteroides uniformis | Bacteroides | 2.4942 |
| Blautia glucerasea | Blautia | 2.1226 |
| Ruminococcus gauvreauii | Ruminococcus | 1.9742 |
| Flintibacter butyricus | Flintibacter | 1.8232 |
| Enterocloster asparagiformis | Enterocloster | 1.7381 |
| Akkermansia muciniphila | Akkermansia | 1.6687 |
| Lactobacillus delbrueckii | Lactobacillus | 1.3287 |
| Enterocloster lavalensis | Enterocloster | 1.3232 |
| Blautia hominis | Blautia | 1.2782 |
| Blautia schinkii | Blautia | 1.1724 |
| Bacteroides ovatus | Bacteroides | 1.1599 |
| Lactobacillus acetotolerans | Lactobacillus | 1.1435 |
| Marvinbryantia formatexigens | Marvinbryantia | 1.1231 |
| Blautia faecis | Blautia | 1.1125 |
| Neglectibacter timonensis | Neglectibacter | 1.0816 |
| Blautia obeum | Blautia | 1.0258 |
| Lactobacillus psittaci | Lactobacillus | 0.9889 |
| Ligilactobacillus murinus | Ligilactobacillus | 0.9889 |
| Bacteroides zoogleoformans | Bacteroides | 0.9889 |
Saved public metadata
{
"run_accession": "SRR23495429",
"study_accession": "PRJNA935668",
"sample_accession": "SAMN33322876",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "12047",
"base_count": "17478119",
"fastq_bytes": "16541385",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR234/029/SRR23495429/SRR23495429_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "a179db07b2afdc3e0d2fef2a6da6989bc8329a3d66efec90e637f2944ae775d9",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1447,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 12047,
"reads_skipped": 8715,
"elapsed_seconds": 0.9264378230000148,
"reads_submitted": 12047,
"reads_after_filter": 12047,
"adapter_scan": {
"sampled": 200,
"matched": 2,
"fraction": 0.01,
"adapters_found": {
"27F": 1,
"1492R_rc": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}