SRR23495426 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Lactobacillus johnsonii | Lactobacillus | 20.8439 |
| Lactobacillus taiwanensis | Lactobacillus | 8.9706 |
| Ruminococcus champanellensis | Ruminococcus | 8.5840 |
| Ligilactobacillus murinus | Ligilactobacillus | 6.8682 |
| Lactobacillus delbrueckii | Lactobacillus | 4.3957 |
| Limosilactobacillus reuteri | Limosilactobacillus | 4.0936 |
| Bacteroides uniformis | Bacteroides | 4.0684 |
| Muribaculum intestinale | Muribaculum | 3.4211 |
| Bacteroides ovatus | Bacteroides | 3.1610 |
| Ligilactobacillus aviarius | Ligilactobacillus | 3.0996 |
| Bacteroides zoogleoformans | Bacteroides | 3.0699 |
| Lactobacillus acetotolerans | Lactobacillus | 3.0440 |
| Akkermansia muciniphila | Akkermansia | 2.9532 |
| Ligilactobacillus agilis | Ligilactobacillus | 2.4650 |
| Lactobacillus psittaci | Lactobacillus | 2.1053 |
| Ruminococcus gauvreauii | Ruminococcus | 1.7937 |
| Parabacteroides goldsteinii | Parabacteroides | 1.6082 |
| Ruminococcus flavefaciens | Ruminococcus | 1.5236 |
| Neglectibacter timonensis | Neglectibacter | 1.5205 |
| Bacteroides fragilis | Bacteroides | 1.4644 |
| Lactobacillus gasseri | Lactobacillus | 1.4342 |
| Ligilactobacillus apodemi | Ligilactobacillus | 1.2726 |
| Bacteroides caecimuris | Bacteroides | 1.1694 |
| Bacteroides rodentium | Bacteroides | 1.1312 |
| Alistipes finegoldii | Alistipes | 1.0381 |
| Alistipes putredinis | Alistipes | 1.0379 |
| Ligilactobacillus salivarius | Ligilactobacillus | 0.8572 |
| Ruminiclostridium cellulolyticum | Ruminiclostridium | 0.8294 |
| Ruminiclostridium hungatei | Ruminiclostridium | 0.7986 |
| Ruminiclostridium cellobioparum | Ruminiclostridium | 0.7104 |
| Lactobacillus hominis | Lactobacillus | 0.6671 |
Saved public metadata
{
"run_accession": "SRR23495426",
"study_accession": "PRJNA935668",
"sample_accession": "SAMN33322879",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "12047",
"base_count": "17463061",
"fastq_bytes": "16842342",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR234/026/SRR23495426/SRR23495426_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "026fad6c753ebcab316c2c2f001a790cec79230c28a0fec1fbfebe474ddda470",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1445,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 12047,
"reads_skipped": 8557,
"elapsed_seconds": 0.9036759960000609,
"reads_submitted": 12047,
"reads_after_filter": 12047,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"BC_FLANK": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}