SRR23495423 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Lactobacillus johnsonii | Lactobacillus | 26.6317 |
| Lactobacillus taiwanensis | Lactobacillus | 10.3127 |
| Lactobacillus delbrueckii | Lactobacillus | 5.4540 |
| Lactobacillus acetotolerans | Lactobacillus | 5.3206 |
| Bacteroides uniformis | Bacteroides | 4.0024 |
| Bacteroides ovatus | Bacteroides | 3.8908 |
| Ligilactobacillus murinus | Ligilactobacillus | 3.8862 |
| Lactobacillus psittaci | Lactobacillus | 3.7949 |
| Muribaculum intestinale | Muribaculum | 3.5532 |
| Ruminococcus champanellensis | Ruminococcus | 3.4794 |
| Parabacteroides goldsteinii | Parabacteroides | 2.5155 |
| Bacteroides zoogleoformans | Bacteroides | 2.4406 |
| Limosilactobacillus reuteri | Limosilactobacillus | 2.3263 |
| Ligilactobacillus agilis | Ligilactobacillus | 2.1775 |
| Akkermansia muciniphila | Akkermansia | 2.0355 |
| Lactobacillus gasseri | Lactobacillus | 1.8948 |
| Ligilactobacillus aviarius | Ligilactobacillus | 1.8823 |
| Bacteroides caecimuris | Bacteroides | 1.8645 |
| Ruminococcus gauvreauii | Ruminococcus | 1.8420 |
| Alistipes putredinis | Alistipes | 1.5413 |
| Bacteroides fragilis | Bacteroides | 1.4072 |
| Bacteroides stercoris | Bacteroides | 1.1702 |
| Bacteroides cellulosilyticus | Bacteroides | 1.1085 |
| Bacteroides rodentium | Bacteroides | 1.0600 |
| Lactobacillus hominis | Lactobacillus | 1.0226 |
| Alistipes finegoldii | Alistipes | 0.9303 |
| Neglectibacter timonensis | Neglectibacter | 0.8433 |
| Lactobacillus helveticus | Lactobacillus | 0.8097 |
| Bacteroides thetaiotaomicron | Bacteroides | 0.8021 |
Saved public metadata
{
"run_accession": "SRR23495423",
"study_accession": "PRJNA935668",
"sample_accession": "SAMN33322882",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "12047",
"base_count": "17467389",
"fastq_bytes": "16775015",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR234/023/SRR23495423/SRR23495423_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "768241ec9d794e398897b7e8f265ffa73c99226a55e35aed42365e25b3a6c730",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1445,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 12047,
"reads_skipped": 8521,
"elapsed_seconds": 0.9225912760002757,
"reads_submitted": 12047,
"reads_after_filter": 12047,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"27F": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}