SRR23225890 · Gut microbiome
KPE01
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 19.7756 |
| Prevotella copri | Prevotella | 14.0103 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 7.0822 |
| Muribaculum intestinale | Muribaculum | 5.9424 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 5.7806 |
| Treponema succinifaciens | Treponema | 5.6481 |
| Butyricicoccus faecihominis | Butyricicoccus | 5.5580 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 4.5941 |
| Treponema brennaborense | Treponema | 4.5520 |
| Prevotella ruminicola | Prevotella | 4.3446 |
| Commensalibacter intestini | Commensalibacter | 3.6629 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 2.6211 |
| Prevotella stercorea | Prevotella | 2.2355 |
| Prevotella oris | Prevotella | 1.9877 |
| Prevotella heparinolytica | Prevotella | 1.5416 |
| Prevotella oryzae | Prevotella | 1.4181 |
| Prevotella jejuni | Prevotella | 1.3888 |
| Methylacidimicrobium tartarophylax | Methylacidimicrobium | 1.1725 |
| Prevotella fusca | Prevotella | 1.0944 |
| Prevotella oulorum | Prevotella | 0.8923 |
| Prevotella brevis | Prevotella | 0.8751 |
| Anaerotignum faecicola | Anaerotignum | 0.6564 |
| Prevotella melaninogenica | Prevotella | 0.6273 |
| Allocoprococcus comes | Allocoprococcus | 0.5928 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.5717 |
| Prevotella denticola | Prevotella | 0.5677 |
| Treponema bryantii | Treponema | 0.5521 |
| Flavonifractor plautii | Flavonifractor | 0.2541 |
Saved public metadata
{
"run_accession": "SRR23225890",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886301",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "24477",
"base_count": "35348157",
"fastq_bytes": "28901712",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/090/SRR23225890/SRR23225890_1.fastq.gz",
"sample_title": "KPE01",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "7b7821e12ef9037a4a55eb7865cd44e97f838e4340ec2cfb393865c86c186d10",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 15230,
"elapsed_seconds": 1.201238420999971,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}