SRR23225889 · Gut microbiome
KPE02
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella copri | Prevotella | 23.2219 |
| Faecalibacterium prausnitzii | Faecalibacterium | 16.5566 |
| Prevotella ruminicola | Prevotella | 7.2076 |
| Treponema brennaborense | Treponema | 7.0697 |
| Muribaculum intestinale | Muribaculum | 4.6068 |
| Treponema succinifaciens | Treponema | 3.0168 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 2.8250 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 2.7946 |
| Prevotella stercorea | Prevotella | 2.3804 |
| Butyricicoccus faecihominis | Butyricicoccus | 2.3266 |
| Anaerovibrio lipolyticus | Anaerovibrio | 2.2058 |
| Prevotella fusca | Prevotella | 2.0437 |
| Anaplasma phagocytophilum | Anaplasma | 1.9081 |
| Prevotella oulorum | Prevotella | 1.9078 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 1.8994 |
| Marseilla massiliensis | Marseilla | 1.7137 |
| Anaerostipes hadrus | Anaerostipes | 1.6678 |
| Prevotella oris | Prevotella | 1.5227 |
| Prevotella jejuni | Prevotella | 1.3496 |
| Roseburia hominis | Roseburia | 1.2915 |
| Roseburia intestinalis | Roseburia | 1.2604 |
| Anaplasma marginale | Anaplasma | 1.1700 |
| Prevotella heparinolytica | Prevotella | 1.0826 |
| Prevotella melaninogenica | Prevotella | 0.9452 |
| Prevotella brevis | Prevotella | 0.9158 |
| Parabacteroides distasonis | Parabacteroides | 0.8339 |
| Treponema bryantii | Treponema | 0.7003 |
| Commensalibacter intestini | Commensalibacter | 0.5649 |
| Anaplasma centrale | Anaplasma | 0.5130 |
| Campylobacter avium | Campylobacter | 0.4842 |
| Roseburia inulinivorans | Roseburia | 0.4744 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.4573 |
| Prevotella dentalis | Prevotella | 0.4364 |
| Prevotella nigrescens | Prevotella | 0.3497 |
| Parabacteroides chongii | Parabacteroides | 0.2959 |
Saved public metadata
{
"run_accession": "SRR23225889",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886302",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "26228",
"base_count": "38049493",
"fastq_bytes": "31026721",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/089/SRR23225889/SRR23225889_1.fastq.gz",
"sample_title": "KPE02",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "bb909c45e511288545c5ed03a9bf7a522477b7baaaa967eaa5de0188ffb2edfa",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 12497,
"elapsed_seconds": 1.3050593609996213,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}