SRR23225887 · Gut microbiome
PNY11
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 27.0713 |
| Prevotella copri | Prevotella | 18.2580 |
| Prevotella stercorea | Prevotella | 8.7419 |
| Prevotella ruminicola | Prevotella | 7.8695 |
| Succinivibrio dextrinosolvens | Succinivibrio | 3.7801 |
| Butyricicoccus faecihominis | Butyricicoccus | 3.0163 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 2.9403 |
| Prevotella oris | Prevotella | 2.1982 |
| Prevotella jejuni | Prevotella | 2.1140 |
| Blautia glucerasea | Blautia | 2.0933 |
| Muribaculum intestinale | Muribaculum | 1.8582 |
| Victivallis vadensis | Victivallis | 1.7946 |
| Prevotella loescheii | Prevotella | 1.6596 |
| Prevotella oulorum | Prevotella | 1.3128 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 1.0832 |
| Prevotella brevis | Prevotella | 1.0539 |
| Marseilla massiliensis | Marseilla | 1.0305 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 0.9913 |
| Anaplasma phagocytophilum | Anaplasma | 0.9664 |
| Prevotella fusca | Prevotella | 0.9256 |
| Prevotella oryzae | Prevotella | 0.9069 |
| Prevotella melaninogenica | Prevotella | 0.8983 |
| Desulfovibrio piger | Desulfovibrio | 0.8687 |
| Blautia producta | Blautia | 0.7449 |
| Anaplasma marginale | Anaplasma | 0.6882 |
| Prevotella dentalis | Prevotella | 0.6865 |
| Alistipes putredinis | Alistipes | 0.6236 |
| Desulfovibrio fairfieldensis | Desulfovibrio | 0.6204 |
| Roseburia intestinalis | Roseburia | 0.5910 |
| Prevotella heparinolytica | Prevotella | 0.5546 |
| Parabacteroides johnsonii | Parabacteroides | 0.4327 |
| Roseburia hominis | Roseburia | 0.3890 |
| Prevotella buccalis | Prevotella | 0.3766 |
| Commensalibacter intestini | Commensalibacter | 0.3055 |
| Prevotella colorans | Prevotella | 0.2982 |
| Prevotella saccharolytica | Prevotella | 0.2558 |
Saved public metadata
{
"run_accession": "SRR23225887",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886401",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "18675",
"base_count": "27211681",
"fastq_bytes": "22001386",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/087/SRR23225887/SRR23225887_1.fastq.gz",
"sample_title": "PNY11",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "5cab38138095ac2f571c40a3b52b7e157cd7e53c8d37f2a0b8967540eb5996c0",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1481,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 18675,
"reads_skipped": 10751,
"elapsed_seconds": 1.2381099589999849,
"reads_submitted": 18675,
"reads_after_filter": 18675,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}