SRR23225885 · Gut microbiome
PNY13
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Victivallis vadensis | Victivallis | 18.5734 |
| Prevotella copri | Prevotella | 14.6089 |
| Muribaculum intestinale | Muribaculum | 11.5766 |
| Succinivibrio dextrinosolvens | Succinivibrio | 7.3933 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 4.5026 |
| Bacteroides helcogenes | Bacteroides | 3.0669 |
| Bacteroides gallinaceus | Bacteroides | 2.8805 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 2.7041 |
| Bacteroides caecigallinarum | Bacteroides | 2.5838 |
| Prevotella fusca | Prevotella | 2.3700 |
| Prevotella ruminicola | Prevotella | 2.2538 |
| Methylacidimicrobium tartarophylax | Methylacidimicrobium | 2.1093 |
| Prevotella stercorea | Prevotella | 1.8385 |
| Bacteroides caecicola | Bacteroides | 1.6643 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 1.5435 |
| Prevotella jejuni | Prevotella | 1.4473 |
| Prevotella heparinolytica | Prevotella | 1.3749 |
| Prevotella loescheii | Prevotella | 1.3275 |
| Prevotella dentasini | Prevotella | 1.2270 |
| Roseburia hominis | Roseburia | 1.1234 |
| Prevotella denticola | Prevotella | 1.1021 |
| Marseilla massiliensis | Marseilla | 1.0584 |
| Prevotella oulorum | Prevotella | 1.0424 |
| Prevotella oris | Prevotella | 1.0220 |
| Anaeromyxobacter dehalogenans | Anaeromyxobacter | 0.9818 |
| Roseburia intestinalis | Roseburia | 0.9403 |
| Prevotella melaninogenica | Prevotella | 0.8596 |
| Desulfovibrio piger | Desulfovibrio | 0.8400 |
| Bacteroides uniformis | Bacteroides | 0.8362 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 0.8014 |
| Prevotella brevis | Prevotella | 0.7895 |
| Desulfovibrio fairfieldensis | Desulfovibrio | 0.6627 |
| Prevotella oryzae | Prevotella | 0.6334 |
| Prevotella shahii | Prevotella | 0.5775 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.4809 |
| Roseburia inulinivorans | Roseburia | 0.4408 |
| Prevotella dentalis | Prevotella | 0.4406 |
| Subdoligranulum variabile | Subdoligranulum | 0.3206 |
Saved public metadata
{
"run_accession": "SRR23225885",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886403",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "27253",
"base_count": "39732386",
"fastq_bytes": "32402320",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/085/SRR23225885/SRR23225885_1.fastq.gz",
"sample_title": "PNY13",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "868e52e2dd59c27a25c9c7713a3dba536fe6e3ce749a8a7f7b94c522e79cd27c",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1481.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 14962,
"elapsed_seconds": 1.2028782940000156,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"BC_FLANK": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}