SRR23225883 · Gut microbiome
PNY15
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella stercorea | Prevotella | 15.3436 |
| Prevotella copri | Prevotella | 14.5285 |
| Faecalibacterium prausnitzii | Faecalibacterium | 12.1303 |
| Prevotella ruminicola | Prevotella | 8.7082 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 5.8276 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 5.1044 |
| Prevotella loescheii | Prevotella | 4.2601 |
| Prevotella oris | Prevotella | 4.0769 |
| Marseilla massiliensis | Marseilla | 3.9210 |
| Anaerovibrio lipolyticus | Anaerovibrio | 2.9346 |
| Muribaculum intestinale | Muribaculum | 2.7154 |
| Prevotella heparinolytica | Prevotella | 2.2575 |
| Prevotella brevis | Prevotella | 1.8181 |
| Prevotella jejuni | Prevotella | 1.5388 |
| Prevotella oulorum | Prevotella | 1.4057 |
| Desulfovibrio piger | Desulfovibrio | 1.4031 |
| Parabacteroides distasonis | Parabacteroides | 1.3029 |
| Roseburia hominis | Roseburia | 1.1810 |
| Prevotella fusca | Prevotella | 1.1308 |
| Selenomonas bovis | Selenomonas | 0.9598 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 0.9251 |
| Prevotella melaninogenica | Prevotella | 0.8183 |
| Prevotella dentalis | Prevotella | 0.6810 |
| Selenomonas ruminantium | Selenomonas | 0.6422 |
| Roseburia intestinalis | Roseburia | 0.6171 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.5993 |
| Selenomonas sputigena | Selenomonas | 0.4533 |
| Prevotella denticola | Prevotella | 0.4452 |
| Prevotella buccalis | Prevotella | 0.4273 |
| Desulfovibrio fairfieldensis | Desulfovibrio | 0.4080 |
| Prevotella buccae | Prevotella | 0.3891 |
| Prevotella colorans | Prevotella | 0.3816 |
| Treponema brennaborense | Treponema | 0.3648 |
| Anaerotignum faecicola | Anaerotignum | 0.2997 |
Saved public metadata
{
"run_accession": "SRR23225883",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886405",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "16925",
"base_count": "24718478",
"fastq_bytes": "19850793",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/083/SRR23225883/SRR23225883_1.fastq.gz",
"sample_title": "PNY15",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "ba9528a66f642ee866f5fe2039759710c05e2f13faf68dd5154ccd49191e1a5a",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1484,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 16925,
"reads_skipped": 9140,
"elapsed_seconds": 1.2831189940000058,
"reads_submitted": 16925,
"reads_after_filter": 16925,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}