SRR23225882 · Gut microbiome
PNY16
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Succinivibrio dextrinosolvens | Succinivibrio | 16.5745 |
| Prevotella copri | Prevotella | 9.8892 |
| Treponema succinifaciens | Treponema | 7.7455 |
| Prevotella fusca | Prevotella | 7.0513 |
| Coprobacter secundus | Coprobacter | 6.6715 |
| Muribaculum intestinale | Muribaculum | 6.6271 |
| Dialister hominis | Dialister | 5.4633 |
| Clostridium beijerinckii | Clostridium | 4.0238 |
| Prevotella stercorea | Prevotella | 2.8817 |
| Blautia glucerasea | Blautia | 2.4003 |
| Prevotella dentasini | Prevotella | 2.1887 |
| Prevotella denticola | Prevotella | 1.8681 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 1.8278 |
| Dysosmobacter welbionis | Dysosmobacter | 1.7059 |
| Prevotella oris | Prevotella | 1.6982 |
| Bacteroides uniformis | Bacteroides | 1.6145 |
| Parabacteroides distasonis | Parabacteroides | 1.5912 |
| Prevotella jejuni | Prevotella | 1.5847 |
| Clostridium butyricum | Clostridium | 1.5580 |
| Prevotella heparinolytica | Prevotella | 1.4093 |
| Bacteroides gallinaceus | Bacteroides | 1.3968 |
| Clostridium saccharoperbutylacetonicum | Clostridium | 1.3108 |
| Bacteroides helcogenes | Bacteroides | 1.1958 |
| Bacteroides clarus | Bacteroides | 1.1649 |
| Bacteroides fluxus | Bacteroides | 1.1491 |
| Prevotella brevis | Prevotella | 1.1394 |
| Prevotella colorans | Prevotella | 1.0914 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 1.0537 |
| Parabacteroides johnsonii | Parabacteroides | 1.0180 |
| Blautia producta | Blautia | 0.9883 |
| Desulfovibrio piger | Desulfovibrio | 0.8501 |
| Bacteroides caecicola | Bacteroides | 0.7342 |
| Desulfovibrio fairfieldensis | Desulfovibrio | 0.5331 |
Saved public metadata
{
"run_accession": "SRR23225882",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886406",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "16125",
"base_count": "23484252",
"fastq_bytes": "18730102",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/082/SRR23225882/SRR23225882_1.fastq.gz",
"sample_title": "PNY16",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "96c5b33fb73a0e7236c1ed56de5d6c8817c9d6e9da6056433b505b4e703b4be7",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 16125,
"reads_skipped": 11633,
"elapsed_seconds": 1.0617845970000417,
"reads_submitted": 16125,
"reads_after_filter": 16125,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}