SRR23225881 · Gut microbiome
PNY17
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 26.8991 |
| Prevotella copri | Prevotella | 13.0345 |
| Roseburia intestinalis | Roseburia | 5.4723 |
| Roseburia hominis | Roseburia | 5.4563 |
| Succinivibrio dextrinosolvens | Succinivibrio | 5.1878 |
| Ruminococcus champanellensis | Ruminococcus | 3.8051 |
| Blautia glucerasea | Blautia | 3.1771 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 3.0393 |
| Prevotella stercorea | Prevotella | 2.6949 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 2.2356 |
| Anaerovibrio lipolyticus | Anaerovibrio | 2.2055 |
| Prevotella jejuni | Prevotella | 2.1559 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 1.8463 |
| Victivallis vadensis | Victivallis | 1.7239 |
| Acinetobacter variabilis | Acinetobacter | 1.6588 |
| Methylacidimicrobium tartarophylax | Methylacidimicrobium | 1.6281 |
| Blautia producta | Blautia | 1.5522 |
| Anaerobutyricum hallii | Anaerobutyricum | 1.3173 |
| Prevotella oris | Prevotella | 1.2671 |
| Parabacteroides distasonis | Parabacteroides | 1.1096 |
| Selenomonas bovis | Selenomonas | 1.0674 |
| Anaerotignum faecicola | Anaerotignum | 0.9433 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 0.8945 |
| Desulfovibrio piger | Desulfovibrio | 0.8786 |
| Prevotella oulorum | Prevotella | 0.8370 |
| Selenomonas ruminantium | Selenomonas | 0.8190 |
| Parabacteroides johnsonii | Parabacteroides | 0.7817 |
| Prevotella oryzae | Prevotella | 0.7032 |
| Desulfovibrio fairfieldensis | Desulfovibrio | 0.6989 |
| Christensenella minuta | Christensenella | 0.6668 |
| Prevotella fusca | Prevotella | 0.6523 |
| Selenomonas sputigena | Selenomonas | 0.6243 |
| Anaeromyxobacter dehalogenans | Anaeromyxobacter | 0.5367 |
| Prevotella bryantii | Prevotella | 0.4776 |
| Prevotella loescheii | Prevotella | 0.4624 |
| Prevotella brevis | Prevotella | 0.4543 |
| Marseilla massiliensis | Marseilla | 0.4142 |
| Blautia hansenii | Blautia | 0.4097 |
| Slackia isoflavoniconvertens | Slackia | 0.2114 |
Saved public metadata
{
"run_accession": "SRR23225881",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886407",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "17734",
"base_count": "25906852",
"fastq_bytes": "20828885",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/081/SRR23225881/SRR23225881_1.fastq.gz",
"sample_title": "PNY17",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "db5a5f89bdaed0f612dd4cde0d1292a7285b692d4dff93b04d51623cb0fb8a5e",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 17734,
"reads_skipped": 11429,
"elapsed_seconds": 1.1612308680000751,
"reads_submitted": 17734,
"reads_after_filter": 17734,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"BC_FLANK": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}