SRR23225880 · Gut microbiome
PNY18
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Muribaculum intestinale | Muribaculum | 18.2325 |
| Prevotella copri | Prevotella | 12.0274 |
| Faecalibacterium prausnitzii | Faecalibacterium | 11.5928 |
| Prevotella stercorea | Prevotella | 7.2515 |
| Clostridium beijerinckii | Clostridium | 7.1148 |
| Dysosmobacter welbionis | Dysosmobacter | 6.9603 |
| Clostridium saccharoperbutylacetonicum | Clostridium | 4.5863 |
| Lacrimispora saccharolytica | Lacrimispora | 4.3816 |
| Clostridium butyricum | Clostridium | 3.5118 |
| Thermus oshimai | Thermus | 3.1453 |
| Dialister hominis | Dialister | 2.3505 |
| Prevotella fusca | Prevotella | 2.0159 |
| Thermus thermophilus | Thermus | 1.8752 |
| Prevotella oris | Prevotella | 1.8401 |
| Prevotella heparinolytica | Prevotella | 1.2010 |
| Prevotella ruminicola | Prevotella | 1.1321 |
| Roseburia intestinalis | Roseburia | 1.0785 |
| Methylacidimicrobium tartarophylax | Methylacidimicrobium | 1.0543 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 0.9767 |
| Roseburia hominis | Roseburia | 0.9525 |
| Prevotella jejuni | Prevotella | 0.9181 |
| Desulfovibrio fairfieldensis | Desulfovibrio | 0.7954 |
| Prevotella oulorum | Prevotella | 0.7678 |
| Prevotella denticola | Prevotella | 0.7230 |
| Clostridium phytofermentans | Clostridium | 0.6618 |
| Clostridium taeniosporum | Clostridium | 0.6246 |
| Desulfovibrio piger | Desulfovibrio | 0.5967 |
| Prevotella melaninogenica | Prevotella | 0.5671 |
| Clostridium thermosuccinogenes | Clostridium | 0.5477 |
| Prevotella brevis | Prevotella | 0.5167 |
Saved public metadata
{
"run_accession": "SRR23225880",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886408",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "21448",
"base_count": "31360113",
"fastq_bytes": "25006957",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/080/SRR23225880/SRR23225880_1.fastq.gz",
"sample_title": "PNY18",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "5e91eafdf4d385490407b7dcc3730ee87c72c3461380653c35741f8e8751e29c",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1484.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 15502,
"elapsed_seconds": 1.2971438670000452,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}