SRR23225878 · Gut microbiome
PNY20
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 26.6486 |
| Prevotella copri | Prevotella | 14.4767 |
| Dysosmobacter welbionis | Dysosmobacter | 8.5680 |
| Desulfovibrio piger | Desulfovibrio | 8.3325 |
| Blautia glucerasea | Blautia | 5.7483 |
| Blautia producta | Blautia | 4.7973 |
| Prevotella stercorea | Prevotella | 4.4250 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 2.8869 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 2.4712 |
| Treponema succinifaciens | Treponema | 2.0242 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 1.9982 |
| Anaerovibrio lipolyticus | Anaerovibrio | 1.5408 |
| Prevotella oris | Prevotella | 1.3594 |
| Prevotella saccharolytica | Prevotella | 1.3166 |
| Prevotella jejuni | Prevotella | 1.2490 |
| Marseilla massiliensis | Marseilla | 1.1017 |
| Chloroflexus aurantiacus | Chloroflexus | 1.0550 |
| Roseburia intestinalis | Roseburia | 0.9206 |
| Blautia hansenii | Blautia | 0.9063 |
| Prevotella fusca | Prevotella | 0.9038 |
| Prevotella loescheii | Prevotella | 0.8063 |
| Prevotella oulorum | Prevotella | 0.7941 |
| Butyricicoccus faecihominis | Butyricicoccus | 0.7780 |
| Prevotella ruminicola | Prevotella | 0.6663 |
| Roseburia hominis | Roseburia | 0.6618 |
| Prevotella paludivivens | Prevotella | 0.5984 |
| Prevotella brevis | Prevotella | 0.5687 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 0.5414 |
| Treponema bryantii | Treponema | 0.4328 |
| Prevotella heparinolytica | Prevotella | 0.3823 |
| Prevotella oryzae | Prevotella | 0.3651 |
| Prevotella buccalis | Prevotella | 0.3593 |
| Desulfovibrio fairfieldensis | Desulfovibrio | 0.3155 |
Saved public metadata
{
"run_accession": "SRR23225878",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886410",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "26220",
"base_count": "38283175",
"fastq_bytes": "30466970",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/078/SRR23225878/SRR23225878_1.fastq.gz",
"sample_title": "PNY20",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "44ac2baea6f32492056cbae9972c15805d70703c8ad5c1244b2676f5131d4ff1",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1484.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 12700,
"elapsed_seconds": 1.253640846000053,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}