SRR23225876 · Gut microbiome

PNY21

complete

Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.

Open interactive sample report

Taxonomic abundances

Species	Genus	Abundance (%)
Faecalibacterium prausnitzii	Faecalibacterium	26.5173
Clostridium saccharoperbutylacetonicum	Clostridium	8.3752
Clostridium butyricum	Clostridium	7.1441
Blautia glucerasea	Blautia	5.2457
Anaerostipes hadrus	Anaerostipes	5.0704
Senegalimassilia anaerobia	Senegalimassilia	3.7900
Bacteroides gallinaceus	Bacteroides	3.6006
Roseburia hominis	Roseburia	3.3817
Chloroflexus aurantiacus	Chloroflexus	3.0431
Desulfovibrio piger	Desulfovibrio	2.2823
Butyricicoccus pullicaecorum	Butyricicoccus	2.2635
Blautia producta	Blautia	2.0292
Lachnospira eligens	Lachnospira	1.9082
Cellulosilyticum lentocellum	Cellulosilyticum	1.7285
Methylacidimicrobium fagopyrum	Methylacidimicrobium	1.7101
Roseburia intestinalis	Roseburia	1.5929
Prevotella copri	Prevotella	1.5190
Clostridium beijerinckii	Clostridium	1.4984
Roseburia inulinivorans	Roseburia	1.4796
Prevotella stercorea	Prevotella	1.4700
Marseilla massiliensis	Marseilla	1.4101
Methylacidimicrobium tartarophylax	Methylacidimicrobium	1.2477
Prevotella oris	Prevotella	0.9160
Anaerobutyricum hallii	Anaerobutyricum	0.9053
Bacteroides helcogenes	Bacteroides	0.8695
Prevotella ruminicola	Prevotella	0.8199
Hominimerdicola alba	Hominimerdicola	0.7428
Bacteroides zoogleoformans	Bacteroides	0.7079
Prevotella loescheii	Prevotella	0.6499
Butyricicoccus faecihominis	Butyricicoccus	0.6430
Prevotella fusca	Prevotella	0.5925
Desulfovibrio fairfieldensis	Desulfovibrio	0.5730
Prevotella saccharolytica	Prevotella	0.5377
Prevotella brevis	Prevotella	0.5241
Prevotella heparinolytica	Prevotella	0.5185
Chloroflexus aggregans	Chloroflexus	0.4652
Clostridium phytofermentans	Clostridium	0.3880
Clostridium botulinum	Clostridium	0.3841
Hominimerdicola aceti	Hominimerdicola	0.3712
Blautia hansenii	Blautia	0.3549
Clostridium paraputrificum	Clostridium	0.3202
Streptococcus salivarius	Streptococcus	0.2049
Clostridium swellfunianum	Clostridium	0.2037

Saved public metadata

{
  "run_accession": "SRR23225876",
  "study_accession": "PRJNA926923",
  "sample_accession": "SAMN32886411",
  "instrument_platform": "OXFORD_NANOPORE",
  "instrument_model": "MinION",
  "library_strategy": "AMPLICON",
  "library_source": "OTHER",
  "library_selection": "PCR",
  "read_count": "15987",
  "base_count": "23263744",
  "fastq_bytes": "18521802",
  "fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/076/SRR23225876/SRR23225876_1.fastq.gz",
  "sample_title": "PNY21",
  "scientific_name": "gut metagenome"
}

Public files

SRR23225876_1.fastq.gz

Analysis provenance

{
  "marker": "16S",
  "pipeline": "Archaions v18.8",
  "cohort": "Gut, mixed hosts; not curated as a human-only cohort",
  "execution_state": "paused_by_user",
  "sample_state": "complete",
  "read_sampling": "First available reads; not random subsampling",
  "input_sha256": "57c0b801619e6d85a3caf4036eb52e4a5ddbf9314b4236dc773c0145417e1477",
  "length_window_bp": [
    1200,
    2000
  ],
  "median_read_length": 1481,
  "quality_scores": "No measured quality scores in fetched FASTA",
  "classifier_stats": {
    "marker": "16s",
    "pipeline": "v18.8",
    "gpu": "RTX-PRO-6000",
    "input_path": "volume-fastq-gz",
    "reads_in": 15987,
    "reads_skipped": 8036,
    "elapsed_seconds": 1.381396804000019,
    "reads_submitted": 15987,
    "reads_after_filter": 15987,
    "adapter_scan": {
      "sampled": 200,
      "matched": 0,
      "fraction": 0.0,
      "adapters_found": {},
      "should_trim": false
    },
    "porechop_ran": false,
    "porechop_reason": "fast-path: no adapter trimming required"
  },
  "metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}