SRR23225874 · Gut microbiome
PNY23
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Clostridium beijerinckii | Clostridium | 12.3220 |
| Hominimerdicola aceti | Hominimerdicola | 10.3824 |
| Roseburia hominis | Roseburia | 9.3212 |
| Anaerobutyricum hallii | Anaerobutyricum | 7.4741 |
| Dysosmobacter welbionis | Dysosmobacter | 6.2429 |
| Clostridium paraputrificum | Clostridium | 5.6004 |
| Cellulosilyticum lentocellum | Cellulosilyticum | 5.5691 |
| Clostridium saccharoperbutylacetonicum | Clostridium | 5.5562 |
| Clostridium butyricum | Clostridium | 5.0768 |
| Blautia producta | Blautia | 5.0021 |
| Blautia glucerasea | Blautia | 4.7193 |
| Clostridium phytofermentans | Clostridium | 3.2280 |
| Roseburia intestinalis | Roseburia | 3.0447 |
| Clostridium thermosuccinogenes | Clostridium | 2.7831 |
| Hominimerdicola alba | Hominimerdicola | 1.8371 |
| Agathobaculum desmolans | Agathobaculum | 1.7747 |
| Ruminococcus champanellensis | Ruminococcus | 1.6317 |
| Blautia hansenii | Blautia | 1.1554 |
| Desulfovibrio piger | Desulfovibrio | 0.9060 |
| Clostridium saudiense | Clostridium | 0.7991 |
| Clostridium tertium | Clostridium | 0.7738 |
| Prevotella copri | Prevotella | 0.7328 |
| Intestinibacter bartlettii | Intestinibacter | 0.5699 |
| Clostridium felsineum | Clostridium | 0.5674 |
| Desulfovibrio fairfieldensis | Desulfovibrio | 0.4619 |
| Clostridium taeniosporum | Clostridium | 0.4534 |
| Blautia marasmi | Blautia | 0.4506 |
| Clostridium carnis | Clostridium | 0.4239 |
| Clostridium merdae | Clostridium | 0.4070 |
| Subdoligranulum variabile | Subdoligranulum | 0.3908 |
| Anaeromyxobacter dehalogenans | Anaeromyxobacter | 0.3420 |
Saved public metadata
{
"run_accession": "SRR23225874",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886413",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "22806",
"base_count": "33359776",
"fastq_bytes": "25699239",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/074/SRR23225874/SRR23225874_1.fastq.gz",
"sample_title": "PNY23",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "849940bad40ebde045b83ba21c2c45022fd46a5c6e2c31b3108b2b3b26f464e4",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1484.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 13755,
"elapsed_seconds": 1.4933038940000642,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}