SRR23225873 · Gut microbiome
PNY24
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Blautia producta | Blautia | 17.2331 |
| Clostridium paraputrificum | Clostridium | 17.1229 |
| Roseburia hominis | Roseburia | 8.2246 |
| Blautia glucerasea | Blautia | 6.4262 |
| Ruminococcus champanellensis | Ruminococcus | 6.0433 |
| Blautia marasmi | Blautia | 5.5313 |
| Roseburia intestinalis | Roseburia | 3.6331 |
| Clostridium phytofermentans | Clostridium | 3.5223 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 3.5217 |
| Blautia hansenii | Blautia | 2.9492 |
| Clostridium beijerinckii | Clostridium | 2.9063 |
| Anaerobutyricum hallii | Anaerobutyricum | 2.3785 |
| Ruminococcus callidus | Ruminococcus | 2.1415 |
| Clostridium pacaense | Clostridium | 1.7088 |
| Subdoligranulum variabile | Subdoligranulum | 1.5487 |
| Clostridium saccharoperbutylacetonicum | Clostridium | 1.2775 |
| Prevotella copri | Prevotella | 1.1519 |
| Anaerotignum faecicola | Anaerotignum | 1.1101 |
| Roseburia inulinivorans | Roseburia | 1.0376 |
| Clostridium tarantellae | Clostridium | 0.9767 |
| Clostridium butyricum | Clostridium | 0.9661 |
| Ruminococcus bromii | Ruminococcus | 0.8961 |
| Gemmiger formicilis | Gemmiger | 0.8270 |
| Clostridium guangxiense | Clostridium | 0.8104 |
| Butyricicoccus faecihominis | Butyricicoccus | 0.7414 |
| Clostridium botulinum | Clostridium | 0.5148 |
| Mogibacterium diversum | Mogibacterium | 0.5107 |
| Clostridium saudiense | Clostridium | 0.4577 |
| Clostridium carnis | Clostridium | 0.4314 |
| Prevotella stercorea | Prevotella | 0.4279 |
| Blautia luti | Blautia | 0.4204 |
| Clostridium felsineum | Clostridium | 0.3689 |
| Prevotella ruminicola | Prevotella | 0.3517 |
| Dorea formicigenerans | Dorea | 0.3441 |
| Ihubacter massiliensis | Ihubacter | 0.3441 |
| Blautia hominis | Blautia | 0.3261 |
| Agathobaculum desmolans | Agathobaculum | 0.2997 |
| Clostridium cellulovorans | Clostridium | 0.2661 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.2499 |
Saved public metadata
{
"run_accession": "SRR23225873",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886414",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "15687",
"base_count": "22828106",
"fastq_bytes": "17584171",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/073/SRR23225873/SRR23225873_1.fastq.gz",
"sample_title": "PNY24",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "a7473b016907303934aae536b38ba64da39011960ad83bd02595d3828cccf205",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1480,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 15687,
"reads_skipped": 6478,
"elapsed_seconds": 1.7663872389999824,
"reads_submitted": 15687,
"reads_after_filter": 15687,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}