SRR23225872 · Gut microbiome
PNY25
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella copri | Prevotella | 14.3277 |
| Faecalibacterium prausnitzii | Faecalibacterium | 12.8842 |
| Prevotella stercorea | Prevotella | 7.4460 |
| Victivallis vadensis | Victivallis | 6.7197 |
| Desulfovibrio piger | Desulfovibrio | 4.6268 |
| Prevotella saccharolytica | Prevotella | 3.5076 |
| Prevotella loescheii | Prevotella | 3.4369 |
| Marseilla massiliensis | Marseilla | 3.3457 |
| Prevotella oris | Prevotella | 2.9272 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 2.8122 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 2.6021 |
| Blautia glucerasea | Blautia | 2.3927 |
| Muribaculum intestinale | Muribaculum | 2.2024 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 2.1936 |
| Butyricimonas faecalis | Butyricimonas | 2.1753 |
| Prevotella jejuni | Prevotella | 2.0359 |
| Sneathiella chungangensis | Sneathiella | 1.8985 |
| Prevotella ruminicola | Prevotella | 1.8627 |
| Prevotella oulorum | Prevotella | 1.7998 |
| Anaplasma phagocytophilum | Anaplasma | 1.6995 |
| Anaplasma marginale | Anaplasma | 1.4920 |
| Prevotella heparinolytica | Prevotella | 1.4345 |
| Chloroflexus aurantiacus | Chloroflexus | 1.4184 |
| Prevotella brevis | Prevotella | 1.2804 |
| Methylacidimicrobium tartarophylax | Methylacidimicrobium | 1.2067 |
| Blautia producta | Blautia | 1.0521 |
| Prevotella oryzae | Prevotella | 0.9761 |
| Parabacteroides distasonis | Parabacteroides | 0.8701 |
| Prevotella buccalis | Prevotella | 0.8230 |
| Parabacteroides johnsonii | Parabacteroides | 0.7678 |
| Prevotella fusca | Prevotella | 0.6432 |
| Prevotella melaninogenica | Prevotella | 0.5651 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 0.5572 |
| Prevotella dentalis | Prevotella | 0.5376 |
| Roseburia hominis | Roseburia | 0.5004 |
| Sneathiella glossodoripedis | Sneathiella | 0.4824 |
| Anaerotignum faecicola | Anaerotignum | 0.4559 |
| Prevotella buccae | Prevotella | 0.4459 |
| Roseburia intestinalis | Roseburia | 0.4453 |
| Anaeromyxobacter dehalogenans | Anaeromyxobacter | 0.4232 |
| Roseburia inulinivorans | Roseburia | 0.3714 |
| Coprococcus eutactus | Coprococcus | 0.3546 |
Saved public metadata
{
"run_accession": "SRR23225872",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886415",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "40247",
"base_count": "58668921",
"fastq_bytes": "48060056",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/072/SRR23225872/SRR23225872_1.fastq.gz",
"sample_title": "PNY25",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "397c4a427b1e75f79f185a62a8bca1619c284f9d989466a410efb87442ab3375",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 14012,
"elapsed_seconds": 1.2250086819999524,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"BC_FLANK": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}