SRR23225870 · Gut microbiome
PNY27
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Roseburia hominis | Roseburia | 18.7043 |
| Faecalibacterium prausnitzii | Faecalibacterium | 11.9085 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 9.3216 |
| Blautia glucerasea | Blautia | 9.1723 |
| Roseburia intestinalis | Roseburia | 8.6088 |
| Blautia producta | Blautia | 6.7308 |
| Clostridium phytofermentans | Clostridium | 5.7872 |
| Clostridium beijerinckii | Clostridium | 3.9249 |
| Clostridium saudiense | Clostridium | 2.2387 |
| Clostridium tarantellae | Clostridium | 2.1067 |
| Clostridium paraputrificum | Clostridium | 1.9611 |
| Anaerobutyricum hallii | Anaerobutyricum | 1.8665 |
| Ruminococcus champanellensis | Ruminococcus | 1.5201 |
| Blautia hansenii | Blautia | 1.3701 |
| Anaerovibrio lipolyticus | Anaerovibrio | 1.3371 |
| Prevotella copri | Prevotella | 1.2143 |
| Agathobaculum desmolans | Agathobaculum | 1.0872 |
| Prevotella stercorea | Prevotella | 0.9272 |
| Floricoccus penangensis | Floricoccus | 0.8000 |
| Selenomonas bovis | Selenomonas | 0.7263 |
| Floricoccus tropicus | Floricoccus | 0.6601 |
| Butyricicoccus faecihominis | Butyricicoccus | 0.6592 |
| Anaerotignum faecicola | Anaerotignum | 0.6589 |
| Dorea formicigenerans | Dorea | 0.6479 |
| Mogibacterium diversum | Mogibacterium | 0.6369 |
| Clostridium butyricum | Clostridium | 0.5960 |
| Ruminococcus callidus | Ruminococcus | 0.5889 |
| Clostridium botulinum | Clostridium | 0.5569 |
| Prevotella ruminicola | Prevotella | 0.4612 |
| Desulfovibrio piger | Desulfovibrio | 0.4503 |
| Gemmiger formicilis | Gemmiger | 0.4411 |
| Blautia marasmi | Blautia | 0.4219 |
| Clostridium saccharoperbutylacetonicum | Clostridium | 0.4207 |
| Selenomonas sputigena | Selenomonas | 0.3376 |
| Roseburia faecis | Roseburia | 0.3375 |
| Selenomonas ruminantium | Selenomonas | 0.3116 |
| Roseburia inulinivorans | Roseburia | 0.2627 |
| Subdoligranulum variabile | Subdoligranulum | 0.2372 |
Saved public metadata
{
"run_accession": "SRR23225870",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886417",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "17049",
"base_count": "24858486",
"fastq_bytes": "19371864",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/070/SRR23225870/SRR23225870_1.fastq.gz",
"sample_title": "PNY27",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "22bcfaac4e65a7f2155800615a557ab9e48e33ecc1127b20a03f385dddfdace0",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1484,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 17049,
"reads_skipped": 7738,
"elapsed_seconds": 1.5977585270002237,
"reads_submitted": 17049,
"reads_after_filter": 17049,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}