SRR23225869 · Gut microbiome
PNY28
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 33.6753 |
| Dysosmobacter welbionis | Dysosmobacter | 9.7991 |
| Prevotella copri | Prevotella | 8.2085 |
| Blautia glucerasea | Blautia | 6.9272 |
| Desulfovibrio piger | Desulfovibrio | 6.5479 |
| Blautia producta | Blautia | 6.1494 |
| Prevotella stercorea | Prevotella | 3.0886 |
| Chloroflexus aurantiacus | Chloroflexus | 2.6726 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 2.1826 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 2.1314 |
| Clostridium paraputrificum | Clostridium | 2.1221 |
| Roseburia hominis | Roseburia | 1.8728 |
| Ruminococcus champanellensis | Ruminococcus | 1.6932 |
| Roseburia intestinalis | Roseburia | 1.4554 |
| Blautia hansenii | Blautia | 1.1304 |
| Prevotella oris | Prevotella | 1.1192 |
| Marseilla massiliensis | Marseilla | 1.0857 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 1.0460 |
| Prevotella saccharolytica | Prevotella | 0.8824 |
| Ruminococcus callidus | Ruminococcus | 0.8309 |
| Clostridium beijerinckii | Clostridium | 0.7732 |
| Prevotella loescheii | Prevotella | 0.6955 |
| Prevotella fusca | Prevotella | 0.6355 |
| Prevotella oulorum | Prevotella | 0.5278 |
| Prevotella brevis | Prevotella | 0.4448 |
| Prevotella jejuni | Prevotella | 0.4334 |
| Prevotella ruminicola | Prevotella | 0.4312 |
| Prevotella heparinolytica | Prevotella | 0.3859 |
| Butyricicoccus faecihominis | Butyricicoccus | 0.3712 |
| Prevotella melaninogenica | Prevotella | 0.3688 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 0.3118 |
Saved public metadata
{
"run_accession": "SRR23225869",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886418",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "21800",
"base_count": "31862849",
"fastq_bytes": "25046419",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/069/SRR23225869/SRR23225869_1.fastq.gz",
"sample_title": "PNY28",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "248b476753aa1367ecb5b92114247d1b01a5e0a6f356bad39a4af6551d043d65",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 13144,
"elapsed_seconds": 1.333624357000076,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}