SRR23225868 · Gut microbiome
PNY29
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 20.1899 |
| Prevotella copri | Prevotella | 14.8642 |
| Blautia glucerasea | Blautia | 13.9516 |
| Prevotella stercorea | Prevotella | 7.0813 |
| Dysosmobacter welbionis | Dysosmobacter | 5.0963 |
| Desulfovibrio piger | Desulfovibrio | 4.6914 |
| Prevotella ruminicola | Prevotella | 3.9555 |
| Blautia producta | Blautia | 2.7020 |
| Roseburia hominis | Roseburia | 2.5227 |
| Anaerobutyricum hallii | Anaerobutyricum | 2.4435 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 2.2469 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 2.2256 |
| Muribaculum intestinale | Muribaculum | 2.2065 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 2.0191 |
| Prevotella jejuni | Prevotella | 1.4967 |
| Roseburia intestinalis | Roseburia | 1.4008 |
| Butyricicoccus faecihominis | Butyricicoccus | 1.1879 |
| Prevotella oris | Prevotella | 1.1110 |
| Prevotella saccharolytica | Prevotella | 1.1098 |
| Prevotella brevis | Prevotella | 0.9266 |
| Prevotella oulorum | Prevotella | 0.8376 |
| Blautia hansenii | Blautia | 0.6870 |
| Prevotella loescheii | Prevotella | 0.6031 |
| Chloroflexus aurantiacus | Chloroflexus | 0.5864 |
| Allocoprococcus comes | Allocoprococcus | 0.5027 |
| Prevotella fusca | Prevotella | 0.4536 |
| Prevotella paludivivens | Prevotella | 0.4273 |
| Marseilla massiliensis | Marseilla | 0.4084 |
| Blautia luti | Blautia | 0.3919 |
| Prevotella heparinolytica | Prevotella | 0.3900 |
| Roseburia inulinivorans | Roseburia | 0.3630 |
| Prevotella oryzae | Prevotella | 0.3375 |
| Prevotella melaninogenica | Prevotella | 0.3168 |
| Slackia isoflavoniconvertens | Slackia | 0.2653 |
Saved public metadata
{
"run_accession": "SRR23225868",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886419",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "36458",
"base_count": "53314998",
"fastq_bytes": "42002958",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/068/SRR23225868/SRR23225868_1.fastq.gz",
"sample_title": "PNY29",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "8541b6834fc0ecb74ba1769f14a352b01de19acc15ab6419eb54b619bb5a3657",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1484.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 12701,
"elapsed_seconds": 1.2513686919996871,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}