SRR23225867 · Gut microbiome
PNY30
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Sarcina maxima | Sarcina | 23.2143 |
| Faecalibacterium prausnitzii | Faecalibacterium | 12.6985 |
| Desulfovibrio piger | Desulfovibrio | 11.0373 |
| Dysosmobacter welbionis | Dysosmobacter | 7.3100 |
| Roseburia hominis | Roseburia | 5.6344 |
| Blautia glucerasea | Blautia | 4.8460 |
| Blautia producta | Blautia | 4.7198 |
| Agathobaculum desmolans | Agathobaculum | 3.4817 |
| Roseburia intestinalis | Roseburia | 3.3223 |
| Anaerovibrio lipolyticus | Anaerovibrio | 3.0034 |
| Ruminococcus champanellensis | Ruminococcus | 1.9686 |
| Prevotella stercorea | Prevotella | 1.6443 |
| Selenomonas bovis | Selenomonas | 1.4752 |
| Prevotella copri | Prevotella | 1.4415 |
| Sarcina ventriculi | Sarcina | 1.4028 |
| Anaerobutyricum hallii | Anaerobutyricum | 1.3823 |
| Muribaculum intestinale | Muribaculum | 1.3549 |
| Blautia hansenii | Blautia | 1.3030 |
| Selenomonas ruminantium | Selenomonas | 1.1063 |
| Selenomonas sputigena | Selenomonas | 0.8728 |
| Ruminococcus callidus | Ruminococcus | 0.8252 |
| Prevotella oryzae | Prevotella | 0.7856 |
| Pseudocoprococcus catus | Pseudocoprococcus | 0.7368 |
| Prevotella ruminicola | Prevotella | 0.6646 |
| Marseilla massiliensis | Marseilla | 0.6357 |
| Prevotella jejuni | Prevotella | 0.5551 |
| Anaeromyxobacter dehalogenans | Anaeromyxobacter | 0.5490 |
| Ruminococcus bromii | Ruminococcus | 0.4875 |
| Treponema succinifaciens | Treponema | 0.4334 |
| Gemmiger formicilis | Gemmiger | 0.4316 |
| Prevotella oris | Prevotella | 0.3729 |
| Coprococcus eutactus | Coprococcus | 0.3034 |
Saved public metadata
{
"run_accession": "SRR23225867",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886420",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "24891",
"base_count": "36295011",
"fastq_bytes": "28341549",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/067/SRR23225867/SRR23225867_1.fastq.gz",
"sample_title": "PNY30",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "b6b8fdbcb9f85296034e185a05b6d385363f4d93700b58f2d896320a6254585a",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 12981,
"elapsed_seconds": 1.2406565589999445,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}