SRR23225866 · Gut microbiome

KPE13

complete

Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.

Open interactive sample report

Taxonomic abundances

Species	Genus	Abundance (%)
Faecalibacterium prausnitzii	Faecalibacterium	20.0320
Prevotella copri	Prevotella	19.7896
Muribaculum intestinale	Muribaculum	4.9987
Prevotella ruminicola	Prevotella	4.7995
Clostridium saudiense	Clostridium	4.4279
Prevotella fusca	Prevotella	3.7305
Prevotella dentasini	Prevotella	2.9391
Prevotella stercorea	Prevotella	2.7182
Butyricicoccus pullicaecorum	Butyricicoccus	2.6560
Phascolarctobacterium succinatutens	Phascolarctobacterium	2.5744
Prevotella saccharolytica	Prevotella	2.2615
Bacteroides uniformis	Bacteroides	2.1858
Prevotella oris	Prevotella	1.7758
Bacteroides gallinaceus	Bacteroides	1.7263
Prevotella jejuni	Prevotella	1.6409
Prevotella brevis	Prevotella	1.2473
Phascolarctobacterium faecium	Phascolarctobacterium	1.1696
Treponema succinifaciens	Treponema	1.1200
Prevotella oulorum	Prevotella	1.0642
Prevotella buccalis	Prevotella	1.0630
Bacteroides cellulosilyticus	Bacteroides	1.0291
Bacteroides fluxus	Bacteroides	1.0227
Prevotella heparinolytica	Prevotella	0.9915
Bacteroides helcogenes	Bacteroides	0.9730
Methylacidimicrobium fagopyrum	Methylacidimicrobium	0.9297
Prevotella denticola	Prevotella	0.8755
Clostridium isatidis	Clostridium	0.8681
Butyricicoccus faecihominis	Butyricicoccus	0.8480
Anaerostipes hadrus	Anaerostipes	0.8160
Anaerobutyricum hallii	Anaerobutyricum	0.8000
Intestinibacter bartlettii	Intestinibacter	0.8000
Prevotella melaninogenica	Prevotella	0.7296
Bacteroides mediterraneensis	Bacteroides	0.7178
Methylacidimicrobium tartarophylax	Methylacidimicrobium	0.6863
Roseburia hominis	Roseburia	0.6400
Prevotella shahii	Prevotella	0.5557
Bacteroides fragilis	Bacteroides	0.4696
Prevotella dentalis	Prevotella	0.4561
Bacteroides caecicola	Bacteroides	0.4360
Treponema brennaborense	Treponema	0.4320
Prevotella scopos	Prevotella	0.3951
Selenomonas ruminantium	Selenomonas	0.3840
Cellulosilyticum lentocellum	Cellulosilyticum	0.2240

Saved public metadata

{
  "run_accession": "SRR23225866",
  "study_accession": "PRJNA926923",
  "sample_accession": "SAMN32886313",
  "instrument_platform": "OXFORD_NANOPORE",
  "instrument_model": "MinION",
  "library_strategy": "AMPLICON",
  "library_source": "OTHER",
  "library_selection": "PCR",
  "read_count": "19847",
  "base_count": "28596930",
  "fastq_bytes": "23128932",
  "fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/066/SRR23225866/SRR23225866_1.fastq.gz",
  "sample_title": "KPE13",
  "scientific_name": "gut metagenome"
}

Public files

SRR23225866_1.fastq.gz

Analysis provenance

{
  "marker": "16S",
  "pipeline": "Archaions v18.8",
  "cohort": "Gut, mixed hosts; not curated as a human-only cohort",
  "execution_state": "paused_by_user",
  "sample_state": "complete",
  "read_sampling": "First available reads; not random subsampling",
  "input_sha256": "ac3e403cc26eb19f1a397117ba0e54905e68655d0c46a50beb29526986fafc25",
  "length_window_bp": [
    1200,
    2000
  ],
  "median_read_length": 1482,
  "quality_scores": "No measured quality scores in fetched FASTA",
  "classifier_stats": {
    "marker": "16s",
    "pipeline": "v18.8",
    "gpu": "RTX-PRO-6000",
    "input_path": "volume-fastq-gz",
    "reads_in": 19847,
    "reads_skipped": 13479,
    "elapsed_seconds": 1.3347894300000007,
    "reads_submitted": 19847,
    "reads_after_filter": 19847,
    "adapter_scan": {
      "sampled": 200,
      "matched": 0,
      "fraction": 0.0,
      "adapters_found": {},
      "should_trim": false
    },
    "porechop_ran": false,
    "porechop_reason": "fast-path: no adapter trimming required"
  },
  "metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}