SRR23225865 · Gut microbiome
KPE14
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella copri | Prevotella | 25.4455 |
| Faecalibacterium prausnitzii | Faecalibacterium | 22.4139 |
| Anaerostipes hadrus | Anaerostipes | 5.3722 |
| Blautia glucerasea | Blautia | 4.6775 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 4.6257 |
| Treponema succinifaciens | Treponema | 3.9869 |
| Prevotella ruminicola | Prevotella | 2.9868 |
| Prevotella fusca | Prevotella | 2.9171 |
| Muribaculum intestinale | Muribaculum | 2.3748 |
| Prevotella oulorum | Prevotella | 2.3254 |
| Hominimerdicola aceti | Hominimerdicola | 2.2103 |
| Prevotella stercorea | Prevotella | 2.0827 |
| Blautia producta | Blautia | 1.8920 |
| Treponema brennaborense | Treponema | 1.8200 |
| Butyricicoccus faecihominis | Butyricicoccus | 1.7692 |
| Prevotella oris | Prevotella | 1.6895 |
| Prevotella jejuni | Prevotella | 1.1487 |
| Allocoprococcus comes | Allocoprococcus | 1.0747 |
| Dialister hominis | Dialister | 1.0227 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.9880 |
| Prevotella heparinolytica | Prevotella | 0.9063 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 0.8999 |
| Prevotella brevis | Prevotella | 0.7747 |
| Prevotella saccharolytica | Prevotella | 0.5822 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 0.5388 |
| Prevotella melaninogenica | Prevotella | 0.5204 |
| Prevotella buccalis | Prevotella | 0.5143 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 0.5099 |
| Anaerostipes butyraticus | Anaerostipes | 0.5040 |
| Hominimerdicola alba | Hominimerdicola | 0.4422 |
| Methylacidimicrobium tartarophylax | Methylacidimicrobium | 0.3915 |
| Prevotella dentalis | Prevotella | 0.3494 |
| Cellulosilyticum lentocellum | Cellulosilyticum | 0.2427 |
Saved public metadata
{
"run_accession": "SRR23225865",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886314",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "18068",
"base_count": "26125871",
"fastq_bytes": "21164388",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/065/SRR23225865/SRR23225865_1.fastq.gz",
"sample_title": "KPE14",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "09a747c1006b11b0aba197b806c28f3427278ba8efd1769b1c07080d2da0b426",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1484.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 18068,
"reads_skipped": 12235,
"elapsed_seconds": 1.1531070900000486,
"reads_submitted": 18068,
"reads_after_filter": 18068,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"BC_FLANK": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}