SRR23225863 · Gut microbiome
KPE16
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella copri | Prevotella | 20.5560 |
| Faecalibacterium prausnitzii | Faecalibacterium | 17.4685 |
| Prevotella ruminicola | Prevotella | 12.4996 |
| Muribaculum intestinale | Muribaculum | 7.0420 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 4.0490 |
| Prevotella stercorea | Prevotella | 3.4647 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 2.6072 |
| Butyricicoccus faecihominis | Butyricicoccus | 2.3813 |
| Prevotella fusca | Prevotella | 2.3014 |
| Prevotella oris | Prevotella | 2.0192 |
| Prevotella oulorum | Prevotella | 1.8776 |
| Blautia glucerasea | Blautia | 1.8453 |
| Prevotella saccharolytica | Prevotella | 1.6574 |
| Treponema succinifaciens | Treponema | 1.6438 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 1.6178 |
| Prevotella jejuni | Prevotella | 1.3979 |
| Prevotella brevis | Prevotella | 1.3223 |
| Prevotella heparinolytica | Prevotella | 1.1575 |
| Lachnospira eligens | Lachnospira | 1.0726 |
| Anaerostipes hadrus | Anaerostipes | 1.0023 |
| Blautia producta | Blautia | 0.8645 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 0.7582 |
| Roseburia hominis | Roseburia | 0.7504 |
| Treponema brennaborense | Treponema | 0.7448 |
| Prevotella shahii | Prevotella | 0.7063 |
| Prevotella buccalis | Prevotella | 0.6308 |
| Desulfovibrio piger | Desulfovibrio | 0.5907 |
| Anaerotignum faecicola | Anaerotignum | 0.5779 |
| Prevotella melaninogenica | Prevotella | 0.5345 |
| Helicobacter macacae | Helicobacter | 0.5136 |
| Prevotella dentalis | Prevotella | 0.5104 |
| Roseburia intestinalis | Roseburia | 0.5008 |
| Campylobacter avium | Campylobacter | 0.4880 |
| Prevotella denticola | Prevotella | 0.4496 |
| Methylacidimicrobium tartarophylax | Methylacidimicrobium | 0.4232 |
| Prevotella bivia | Prevotella | 0.4022 |
| Prevotella scopos | Prevotella | 0.3893 |
| Fibrobacter succinogenes | Fibrobacter | 0.3210 |
| Blautia hansenii | Blautia | 0.3080 |
| Selenomonas ruminantium | Selenomonas | 0.2954 |
| Helicobacter fennelliae | Helicobacter | 0.2570 |
Saved public metadata
{
"run_accession": "SRR23225863",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886316",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "25024",
"base_count": "36339983",
"fastq_bytes": "29431463",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/063/SRR23225863/SRR23225863_1.fastq.gz",
"sample_title": "KPE16",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "7633c10aefff17f84be72fdfbac10f7d8623cdb97bd8a1ebda37229e7f6bf5a4",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 12123,
"elapsed_seconds": 1.3237251719997403,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}