SRR23225862 · Gut microbiome
KPE17
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 26.0103 |
| Prevotella copri | Prevotella | 17.5226 |
| Prevotella ruminicola | Prevotella | 4.7344 |
| Sphaerochaeta globosa | Sphaerochaeta | 4.2106 |
| Treponema brennaborense | Treponema | 3.3875 |
| Muribaculum intestinale | Muribaculum | 3.3269 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 3.1469 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 3.1329 |
| Prevotella fusca | Prevotella | 2.9965 |
| Anaerostipes hadrus | Anaerostipes | 2.9600 |
| Treponema succinifaciens | Treponema | 2.2822 |
| Bacteroides uniformis | Bacteroides | 1.9206 |
| Prevotella stercorea | Prevotella | 1.6609 |
| Bacteroides gallinaceus | Bacteroides | 1.5201 |
| Prevotella dentasini | Prevotella | 1.3005 |
| Sphaerochaeta coccoides | Sphaerochaeta | 1.2856 |
| Prevotella jejuni | Prevotella | 1.2069 |
| Prevotella oris | Prevotella | 1.1624 |
| Commensalibacter intestini | Commensalibacter | 1.1094 |
| Bacteroides cellulosilyticus | Bacteroides | 1.0690 |
| Prevotella brevis | Prevotella | 1.0277 |
| Methylacidimicrobium cyclopophantes | Methylacidimicrobium | 0.9108 |
| Prevotella heparinolytica | Prevotella | 0.8897 |
| Prevotella melaninogenica | Prevotella | 0.8240 |
| Roseburia intestinalis | Roseburia | 0.8122 |
| Prevotella oryzae | Prevotella | 0.7961 |
| Prevotella saccharolytica | Prevotella | 0.7563 |
| Parabacteroides distasonis | Parabacteroides | 0.7439 |
| Bacteroides helcogenes | Bacteroides | 0.7269 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 0.7226 |
| Treponema bryantii | Treponema | 0.7003 |
| Prevotella oulorum | Prevotella | 0.6955 |
| Parabacteroides chongii | Parabacteroides | 0.6339 |
| Parabacteroides merdae | Parabacteroides | 0.6219 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 0.6144 |
| Bacteroides fluxus | Bacteroides | 0.5749 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.5463 |
| Butyricicoccus faecihominis | Butyricicoccus | 0.5452 |
| Cellulosilyticum lentocellum | Cellulosilyticum | 0.4952 |
| Prevotella dentalis | Prevotella | 0.4160 |
Saved public metadata
{
"run_accession": "SRR23225862",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886317",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "14980",
"base_count": "21654901",
"fastq_bytes": "17659566",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/062/SRR23225862/SRR23225862_1.fastq.gz",
"sample_title": "KPE17",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "c5dc4be05cebb35c45585ec931664ff9740a9addf9ac74c1cdb28b6e291e6b45",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 14980,
"reads_skipped": 9874,
"elapsed_seconds": 1.0794493759999568,
"reads_submitted": 14980,
"reads_after_filter": 14980,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}