SRR23225861 · Gut microbiome
KPE18
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 16.2606 |
| Prevotella copri | Prevotella | 15.7750 |
| Ruminococcus champanellensis | Ruminococcus | 6.4384 |
| Prevotella ruminicola | Prevotella | 4.1735 |
| Victivallis vadensis | Victivallis | 3.6925 |
| Prevotella stercorea | Prevotella | 3.4799 |
| Cutibacterium acnes | Cutibacterium | 3.2897 |
| Anaerostipes hadrus | Anaerostipes | 3.2729 |
| Muribaculum intestinale | Muribaculum | 3.2498 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 3.1856 |
| Treponema brennaborense | Treponema | 2.9664 |
| Blautia glucerasea | Blautia | 2.5284 |
| Prevotella fusca | Prevotella | 2.2271 |
| Christensenella timonensis | Christensenella | 1.9607 |
| Butyricicoccus faecihominis | Butyricicoccus | 1.8951 |
| Terasakiella brassicae | Terasakiella | 1.8630 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 1.8391 |
| Parabacteroides chongii | Parabacteroides | 1.7783 |
| Anaerotignum faecicola | Anaerotignum | 1.7120 |
| Treponema succinifaciens | Treponema | 1.6111 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 1.5848 |
| Prevotella oulorum | Prevotella | 1.5194 |
| Blautia producta | Blautia | 1.4159 |
| Christensenella massiliensis | Christensenella | 1.1727 |
| Treponema primitia | Treponema | 1.0955 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 1.0672 |
| Prevotella oris | Prevotella | 1.0643 |
| Anaerobutyricum hallii | Anaerobutyricum | 1.0070 |
| Parabacteroides distasonis | Parabacteroides | 0.9651 |
| Prevotella jejuni | Prevotella | 0.7223 |
| Prevotella brevis | Prevotella | 0.7019 |
| Methylacidimicrobium tartarophylax | Methylacidimicrobium | 0.6616 |
| Thermus oshimai | Thermus | 0.6378 |
| Christensenella minuta | Christensenella | 0.6244 |
| Prevotella saccharolytica | Prevotella | 0.5707 |
| Selenomonas ruminantium | Selenomonas | 0.5203 |
| Prevotella heparinolytica | Prevotella | 0.5165 |
| Prevotella denticola | Prevotella | 0.4835 |
| Campylobacter avium | Campylobacter | 0.4700 |
Saved public metadata
{
"run_accession": "SRR23225861",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886318",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "21627",
"base_count": "31160356",
"fastq_bytes": "25370007",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/061/SRR23225861/SRR23225861_1.fastq.gz",
"sample_title": "KPE18",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "595dcc311bf6ce977c2bed9367b75ab58c24cbf5a184fab368fce8f6e0987bfe",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1480.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 13946,
"elapsed_seconds": 1.2462625539997134,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}