SRR23225859 · Gut microbiome
KPE20
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella copri | Prevotella | 19.8330 |
| Faecalibacterium prausnitzii | Faecalibacterium | 11.5934 |
| Sphaerochaeta globosa | Sphaerochaeta | 9.2266 |
| Treponema succinifaciens | Treponema | 7.8252 |
| Treponema brennaborense | Treponema | 5.8048 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 4.0277 |
| Blautia glucerasea | Blautia | 3.9702 |
| Butyricicoccus faecihominis | Butyricicoccus | 2.9064 |
| Anaerostipes hadrus | Anaerostipes | 2.8690 |
| Prevotella saccharolytica | Prevotella | 2.3023 |
| Prevotella stercorea | Prevotella | 2.2855 |
| Prevotella fusca | Prevotella | 1.9393 |
| Prevotella oris | Prevotella | 1.6868 |
| Muribaculum intestinale | Muribaculum | 1.6246 |
| Blautia producta | Blautia | 1.6123 |
| Prevotella oulorum | Prevotella | 1.5981 |
| Selenomonas ruminantium | Selenomonas | 1.5382 |
| Prevotella ruminicola | Prevotella | 1.5003 |
| Prevotella denticola | Prevotella | 1.4410 |
| Prevotella buccalis | Prevotella | 1.4080 |
| Anaerobutyricum hallii | Anaerobutyricum | 1.3654 |
| Sphaerochaeta coccoides | Sphaerochaeta | 1.3462 |
| Treponema bryantii | Treponema | 1.3254 |
| Prevotella jejuni | Prevotella | 1.1913 |
| Allocoprococcus comes | Allocoprococcus | 0.9506 |
| Prevotella brevis | Prevotella | 0.8360 |
| Prevotella oryzae | Prevotella | 0.8134 |
| Prevotella melaninogenica | Prevotella | 0.7942 |
| Sphaerochaeta associata | Sphaerochaeta | 0.7775 |
| Prevotella scopos | Prevotella | 0.6694 |
| Prevotella shahii | Prevotella | 0.6616 |
| Prevotella colorans | Prevotella | 0.6325 |
| Prevotella heparinolytica | Prevotella | 0.4869 |
| Carboxylicivirga flava | Carboxylicivirga | 0.4199 |
| Treponema pectinovorum | Treponema | 0.3794 |
| Carboxylicivirga taeanensis | Carboxylicivirga | 0.3579 |
Saved public metadata
{
"run_accession": "SRR23225859",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886320",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "28414",
"base_count": "41121929",
"fastq_bytes": "33233460",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/059/SRR23225859/SRR23225859_1.fastq.gz",
"sample_title": "KPE20",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "b5acd055ba90363fba037fc123e0ff87fa1c8f3f0074c79579be2749ee0f5d2c",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 14160,
"elapsed_seconds": 1.1873862090000102,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}