SRR23225858 · Gut microbiome
KPE03
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 20.6211 |
| Prevotella copri | Prevotella | 15.6435 |
| Prevotella stercorea | Prevotella | 14.9327 |
| Dysosmobacter welbionis | Dysosmobacter | 6.4451 |
| Prevotella ruminicola | Prevotella | 5.9933 |
| Marseilla massiliensis | Marseilla | 3.4559 |
| Muribaculum intestinale | Muribaculum | 2.9038 |
| Prevotella saccharolytica | Prevotella | 2.5408 |
| Anaerovibrio lipolyticus | Anaerovibrio | 2.5406 |
| Prevotella oris | Prevotella | 2.3943 |
| Treponema succinifaciens | Treponema | 2.0672 |
| Roseburia hominis | Roseburia | 1.7375 |
| Roseburia intestinalis | Roseburia | 1.7026 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 1.5863 |
| Prevotella oulorum | Prevotella | 1.4304 |
| Prevotella buccalis | Prevotella | 1.4190 |
| Prevotella fusca | Prevotella | 1.2973 |
| Prevotella jejuni | Prevotella | 1.2912 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 1.1595 |
| Prevotella brevis | Prevotella | 1.1439 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 1.0395 |
| Prevotella scopos | Prevotella | 0.7962 |
| Prevotella heparinolytica | Prevotella | 0.6476 |
| Prevotella melaninogenica | Prevotella | 0.6032 |
| Prevotella denticola | Prevotella | 0.5817 |
| Treponema brennaborense | Treponema | 0.5681 |
| Prevotella loescheii | Prevotella | 0.5341 |
| Prevotella paludivivens | Prevotella | 0.5255 |
| Butyricicoccus faecihominis | Butyricicoccus | 0.5198 |
| Prevotella shahii | Prevotella | 0.4665 |
| Prevotella dentalis | Prevotella | 0.4491 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.3945 |
| Dorea formicigenerans | Dorea | 0.3787 |
| Campylobacter avium | Campylobacter | 0.1894 |
Saved public metadata
{
"run_accession": "SRR23225858",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886303",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "15673",
"base_count": "22710498",
"fastq_bytes": "18147310",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/058/SRR23225858/SRR23225858_1.fastq.gz",
"sample_title": "KPE03",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "871fc5a45a4380898032b1240aa0daa4927080331030a756098465dbd1bc4ff9",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 15673,
"reads_skipped": 9297,
"elapsed_seconds": 1.081960970000182,
"reads_submitted": 15673,
"reads_after_filter": 15673,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"27F": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}