SRR23225857 · Gut microbiome
KPE21
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 15.7130 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 12.7195 |
| Butyricicoccus faecihominis | Butyricicoccus | 8.7153 |
| Prevotella copri | Prevotella | 8.4268 |
| Muribaculum intestinale | Muribaculum | 4.8077 |
| Sphaerochaeta globosa | Sphaerochaeta | 3.7126 |
| Prevotella ruminicola | Prevotella | 3.5994 |
| Victivallis vadensis | Victivallis | 3.2350 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 2.8318 |
| Blautia glucerasea | Blautia | 2.6131 |
| Fenollaria massiliensis | Fenollaria | 2.4868 |
| Prevotella fusca | Prevotella | 2.3389 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 2.0264 |
| Allocoprococcus comes | Allocoprococcus | 1.9146 |
| Methylacidimicrobium cyclopophantes | Methylacidimicrobium | 1.6593 |
| Sphaerochaeta coccoides | Sphaerochaeta | 1.6131 |
| Terasakiella brassicae | Terasakiella | 1.4745 |
| Prevotella saccharolytica | Prevotella | 1.4278 |
| Christensenella timonensis | Christensenella | 1.3153 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 1.2307 |
| Anaerostipes hadrus | Anaerostipes | 1.1884 |
| Christensenella minuta | Christensenella | 1.1763 |
| Prevotella oulorum | Prevotella | 1.1721 |
| Anaerotignum faecicola | Anaerotignum | 1.1224 |
| Prevotella dentasini | Prevotella | 1.1195 |
| Helicobacter fennelliae | Helicobacter | 1.1004 |
| Bacteroides uniformis | Bacteroides | 1.0830 |
| Methylacidimicrobium tartarophylax | Methylacidimicrobium | 1.0767 |
| Prevotella oris | Prevotella | 1.0045 |
| Blautia producta | Blautia | 0.9520 |
| Parabacteroides distasonis | Parabacteroides | 0.9499 |
| Christensenella massiliensis | Christensenella | 0.8755 |
| Bacteroides gallinaceus | Bacteroides | 0.7870 |
| Prevotella brevis | Prevotella | 0.7485 |
| Prevotella stercorea | Prevotella | 0.7039 |
| Selenomonas ruminantium | Selenomonas | 0.5722 |
| Parabacteroides chongii | Parabacteroides | 0.5062 |
Saved public metadata
{
"run_accession": "SRR23225857",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886321",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "15457",
"base_count": "22374538",
"fastq_bytes": "18230222",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/057/SRR23225857/SRR23225857_1.fastq.gz",
"sample_title": "KPE21",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "09324e970bf8df4966f77a4719e9c76eb51f0ac5d3d855e2520b6ed3623a26fc",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 15457,
"reads_skipped": 10823,
"elapsed_seconds": 1.0395983309999792,
"reads_submitted": 15457,
"reads_after_filter": 15457,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}