SRR23225856 · Gut microbiome
KPE22
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella copri | Prevotella | 16.8388 |
| Faecalibacterium prausnitzii | Faecalibacterium | 14.0645 |
| Prevotella ruminicola | Prevotella | 13.8887 |
| Sarcina maxima | Sarcina | 5.8455 |
| Muribaculum intestinale | Muribaculum | 4.5052 |
| Treponema brennaborense | Treponema | 4.4378 |
| Anaerostipes hadrus | Anaerostipes | 3.3737 |
| Succinivibrio dextrinosolvens | Succinivibrio | 2.7603 |
| Prevotella saccharolytica | Prevotella | 2.1459 |
| Prevotella stercorea | Prevotella | 1.9434 |
| Terasakiella brassicae | Terasakiella | 1.9279 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 1.8826 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 1.8016 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 1.6956 |
| Prevotella jejuni | Prevotella | 1.6708 |
| Butyricicoccus faecihominis | Butyricicoccus | 1.4553 |
| Prevotella oris | Prevotella | 1.3549 |
| Prevotella oulorum | Prevotella | 1.2048 |
| Treponema succinifaciens | Treponema | 1.1976 |
| Treponema bryantii | Treponema | 1.1559 |
| Prevotella heparinolytica | Prevotella | 1.1262 |
| Prevotella brevis | Prevotella | 1.1091 |
| Prevotella fusca | Prevotella | 0.9332 |
| Prevotella melaninogenica | Prevotella | 0.9059 |
| Anaerotignum faecicola | Anaerotignum | 0.8179 |
| Prevotella denticola | Prevotella | 0.7520 |
| Cellulosilyticum lentocellum | Cellulosilyticum | 0.7302 |
| Prevotella shahii | Prevotella | 0.7261 |
| Roseburia hominis | Roseburia | 0.7179 |
| Prevotella buccalis | Prevotella | 0.6933 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.6718 |
| Anaplasma marginale | Anaplasma | 0.6625 |
| Parabacteroides distasonis | Parabacteroides | 0.6502 |
| Prevotella dentalis | Prevotella | 0.6326 |
| Roseburia intestinalis | Roseburia | 0.6258 |
| Parabacteroides merdae | Parabacteroides | 0.6205 |
| Anaplasma phagocytophilum | Anaplasma | 0.6171 |
| Fibrobacter succinogenes | Fibrobacter | 0.5404 |
| Sarcina ventriculi | Sarcina | 0.3470 |
| Anaplasma centrale | Anaplasma | 0.3415 |
| Parabacteroides chongii | Parabacteroides | 0.3213 |
| Treponema pectinovorum | Treponema | 0.3067 |
Saved public metadata
{
"run_accession": "SRR23225856",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886322",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "20331",
"base_count": "29407803",
"fastq_bytes": "23954806",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/056/SRR23225856/SRR23225856_1.fastq.gz",
"sample_title": "KPE22",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "20a9400b0d912f9f110743a2d97d823237f53da0511f5ca400f1d5e100909c60",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 13074,
"elapsed_seconds": 1.2967546769999672,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"BC_FLANK": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}