SRR23225855 · Gut microbiome
KPE23
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella copri | Prevotella | 20.3802 |
| Faecalibacterium prausnitzii | Faecalibacterium | 18.2879 |
| Prevotella ruminicola | Prevotella | 6.6890 |
| Prevotella saccharolytica | Prevotella | 5.8030 |
| Treponema brennaborense | Treponema | 5.5239 |
| Prevotella stercorea | Prevotella | 4.5379 |
| Muribaculum intestinale | Muribaculum | 3.7171 |
| Prevotella oris | Prevotella | 3.2343 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 2.7876 |
| Prevotella jejuni | Prevotella | 2.5707 |
| Prevotella buccalis | Prevotella | 2.3914 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 2.3760 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 1.9679 |
| Hominimerdicola aceti | Hominimerdicola | 1.8453 |
| Treponema succinifaciens | Treponema | 1.6171 |
| Prevotella shahii | Prevotella | 1.5244 |
| Prevotella brevis | Prevotella | 1.5073 |
| Prevotella melaninogenica | Prevotella | 1.2134 |
| Prevotella fusca | Prevotella | 1.1350 |
| Roseburia hominis | Roseburia | 1.0911 |
| Prevotella heparinolytica | Prevotella | 1.0453 |
| Prevotella oulorum | Prevotella | 0.9428 |
| Butyricicoccus faecihominis | Butyricicoccus | 0.9214 |
| Anaerotignum faecicola | Anaerotignum | 0.7684 |
| Anaerostipes hadrus | Anaerostipes | 0.7483 |
| Treponema bryantii | Treponema | 0.6967 |
| Anaplasma marginale | Anaplasma | 0.6151 |
| Anaplasma phagocytophilum | Anaplasma | 0.5990 |
| Prevotella dentalis | Prevotella | 0.5840 |
| Hominimerdicola alba | Hominimerdicola | 0.5675 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.5533 |
| Prevotella denticola | Prevotella | 0.5082 |
| Cellulosilyticum lentocellum | Cellulosilyticum | 0.5071 |
| Anaerostipes butyraticus | Anaerostipes | 0.3736 |
| Fibrobacter succinogenes | Fibrobacter | 0.3688 |
Saved public metadata
{
"run_accession": "SRR23225855",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886323",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "24005",
"base_count": "34803707",
"fastq_bytes": "28256203",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/055/SRR23225855/SRR23225855_1.fastq.gz",
"sample_title": "KPE23",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "24a2d1c8da8c95dbc24227dcfa71b81e5e49f6d99e128df9d43e63b42e7b8fe5",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 13424,
"elapsed_seconds": 1.3002874789999623,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}