SRR23225853 · Gut microbiome
KPE25
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 18.5533 |
| Prevotella copri | Prevotella | 18.3736 |
| Prevotella ruminicola | Prevotella | 8.8228 |
| Muribaculum intestinale | Muribaculum | 7.5474 |
| Prevotella stercorea | Prevotella | 6.5938 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 5.8315 |
| Anaerostipes hadrus | Anaerostipes | 2.9149 |
| Treponema brennaborense | Treponema | 2.8689 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 2.3733 |
| Commensalibacter intestini | Commensalibacter | 1.8816 |
| Prevotella oris | Prevotella | 1.8621 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 1.8597 |
| Prevotella jejuni | Prevotella | 1.7011 |
| Prevotella fusca | Prevotella | 1.6694 |
| Prevotella heparinolytica | Prevotella | 1.5546 |
| Terasakiella brassicae | Terasakiella | 1.5114 |
| Anaerotignum faecicola | Anaerotignum | 1.3418 |
| Prevotella brevis | Prevotella | 1.2866 |
| Desulfovibrio piger | Desulfovibrio | 1.2801 |
| Treponema succinifaciens | Treponema | 1.0026 |
| Prevotella oulorum | Prevotella | 0.9326 |
| Prevotella melaninogenica | Prevotella | 0.8756 |
| Butyricicoccus faecihominis | Butyricicoccus | 0.8239 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 0.8137 |
| Prevotella oryzae | Prevotella | 0.8135 |
| Eubacterium oxidoreducens | Eubacterium | 0.8020 |
| Prevotella denticola | Prevotella | 0.7519 |
| Campylobacter avium | Campylobacter | 0.6786 |
| Prevotella dentalis | Prevotella | 0.6236 |
| Methylacidimicrobium tartarophylax | Methylacidimicrobium | 0.4972 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.4627 |
| Fibrobacter succinogenes | Fibrobacter | 0.4318 |
| Treponema bryantii | Treponema | 0.3543 |
| Marseilla massiliensis | Marseilla | 0.3085 |
Saved public metadata
{
"run_accession": "SRR23225853",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886325",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "20473",
"base_count": "29637786",
"fastq_bytes": "24306737",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/053/SRR23225853/SRR23225853_1.fastq.gz",
"sample_title": "KPE25",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "e7fe53d149f1f6e69ef6606f432258ec5f2638c2c99b42eef6e29415d6a40892",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 13409,
"elapsed_seconds": 1.2493270449999727,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"1492R_rc": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}