SRR23225848 · Gut microbiome
KPE30
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella copri | Prevotella | 22.9814 |
| Faecalibacterium prausnitzii | Faecalibacterium | 20.7915 |
| Prevotella saccharolytica | Prevotella | 6.3363 |
| Prevotella ruminicola | Prevotella | 5.5091 |
| Prevotella stercorea | Prevotella | 5.1471 |
| Treponema brennaborense | Treponema | 4.8016 |
| Muribaculum intestinale | Muribaculum | 3.5176 |
| Prevotella oris | Prevotella | 2.7679 |
| Prevotella jejuni | Prevotella | 2.7563 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 2.5379 |
| Prevotella buccalis | Prevotella | 2.4704 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 2.2116 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 1.8930 |
| Prevotella fusca | Prevotella | 1.4316 |
| Butyricicoccus faecihominis | Butyricicoccus | 1.3294 |
| Prevotella shahii | Prevotella | 1.2964 |
| Prevotella melaninogenica | Prevotella | 1.1379 |
| Anaerostipes hadrus | Anaerostipes | 1.0793 |
| Prevotella oulorum | Prevotella | 1.0167 |
| Prevotella heparinolytica | Prevotella | 0.9785 |
| Prevotella brevis | Prevotella | 0.9401 |
| Treponema succinifaciens | Treponema | 0.8710 |
| Anaerotignum faecicola | Anaerotignum | 0.8332 |
| Anaplasma phagocytophilum | Anaplasma | 0.7688 |
| Anaplasma marginale | Anaplasma | 0.7271 |
| Prevotella dentalis | Prevotella | 0.6840 |
| Roseburia hominis | Roseburia | 0.6628 |
| Treponema bryantii | Treponema | 0.5762 |
| Cellulosilyticum lentocellum | Cellulosilyticum | 0.5113 |
| Prevotella bivia | Prevotella | 0.4990 |
| Prevotella paludivivens | Prevotella | 0.4733 |
| Prevotella albensis | Prevotella | 0.4615 |
Saved public metadata
{
"run_accession": "SRR23225848",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886330",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "21455",
"base_count": "31092840",
"fastq_bytes": "25227885",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/048/SRR23225848/SRR23225848_1.fastq.gz",
"sample_title": "KPE30",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "9bcf7969049afa9c23edf5ad656892a605d23b818abd87ca112f70c5f4437c4d",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 14638,
"elapsed_seconds": 1.2092040649999944,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"27F": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}