SRR23225847 · Gut microbiome
KPE04
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 21.4304 |
| Prevotella copri | Prevotella | 14.2533 |
| Sphaerochaeta globosa | Sphaerochaeta | 6.0163 |
| Prevotella ruminicola | Prevotella | 5.3901 |
| Treponema brennaborense | Treponema | 4.3314 |
| Muribaculum intestinale | Muribaculum | 3.7923 |
| Anaerostipes hadrus | Anaerostipes | 3.5304 |
| Treponema succinifaciens | Treponema | 3.1991 |
| Blautia glucerasea | Blautia | 2.8615 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 2.7487 |
| Prevotella fusca | Prevotella | 2.5254 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 2.0969 |
| Sphaerochaeta coccoides | Sphaerochaeta | 2.0578 |
| Bacteroides uniformis | Bacteroides | 1.8984 |
| Bacteroides gallinaceus | Bacteroides | 1.6262 |
| Prevotella jejuni | Prevotella | 1.3603 |
| Prevotella stercorea | Prevotella | 1.3280 |
| Blautia producta | Blautia | 1.3196 |
| Prevotella dentasini | Prevotella | 1.2474 |
| Prevotella oris | Prevotella | 1.1776 |
| Commensalibacter intestini | Commensalibacter | 1.0799 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 1.0380 |
| Parabacteroides distasonis | Parabacteroides | 0.9429 |
| Treponema bryantii | Treponema | 0.9189 |
| Bacteroides cellulosilyticus | Bacteroides | 0.9164 |
| Prevotella oryzae | Prevotella | 0.8208 |
| Prevotella brevis | Prevotella | 0.7973 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.7896 |
| Prevotella melaninogenica | Prevotella | 0.7691 |
| Bacteroides helcogenes | Bacteroides | 0.7457 |
| Parabacteroides merdae | Parabacteroides | 0.7363 |
| Bacteroides fluxus | Bacteroides | 0.7077 |
| Prevotella saccharolytica | Prevotella | 0.6213 |
| Butyricicoccus faecihominis | Butyricicoccus | 0.6102 |
| Parabacteroides chongii | Parabacteroides | 0.5868 |
| Prevotella oulorum | Prevotella | 0.5762 |
| Prevotella heparinolytica | Prevotella | 0.5212 |
| Prevotella buccalis | Prevotella | 0.4982 |
| Sphaerochaeta associata | Sphaerochaeta | 0.4903 |
| Bacteroides caecicola | Bacteroides | 0.4791 |
| Helicobacter fennelliae | Helicobacter | 0.4154 |
| Prevotella dentalis | Prevotella | 0.4142 |
| Treponema pectinovorum | Treponema | 0.3335 |
Saved public metadata
{
"run_accession": "SRR23225847",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886304",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "25133",
"base_count": "36451551",
"fastq_bytes": "29858052",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/047/SRR23225847/SRR23225847_1.fastq.gz",
"sample_title": "KPE04",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "d05cf740e908b6a5e3cea5f348f4dd5cecb42f56572684cdbbe93201069c534c",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 12688,
"elapsed_seconds": 1.2619480900000326,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"27F": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}