SRR23225845 · Gut microbiome

BTB02

complete

Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.

Open interactive sample report

Taxonomic abundances

Species	Genus	Abundance (%)
Prevotella copri	Prevotella	24.0363
Faecalibacterium prausnitzii	Faecalibacterium	14.0076
Clostridium saudiense	Clostridium	7.5625
Phascolarctobacterium succinatutens	Phascolarctobacterium	6.6699
Sphaerochaeta globosa	Sphaerochaeta	5.1703
Muribaculum intestinale	Muribaculum	2.6297
Treponema succinifaciens	Treponema	2.6134
Prevotella fusca	Prevotella	2.6129
Prevotella stercorea	Prevotella	2.4884
Prevotella jejuni	Prevotella	2.3007
Prevotella oulorum	Prevotella	1.6046
Sphaerochaeta coccoides	Sphaerochaeta	1.5060
Bacteroides gallinaceus	Bacteroides	1.4980
Phascolarctobacterium faecium	Phascolarctobacterium	1.4187
Dialister hominis	Dialister	1.3891
Prevotella oryzae	Prevotella	1.3378
Christensenella timonensis	Christensenella	1.3023
Fenollaria massiliensis	Fenollaria	1.3023
Blautia glucerasea	Blautia	1.2900
Methylacidimicrobium fagopyrum	Methylacidimicrobium	1.1816
Bacteroides helcogenes	Bacteroides	1.1657
Methylacidimicrobium cyclopophantes	Methylacidimicrobium	0.9889
Bacteroides uniformis	Bacteroides	0.9757
Blautia producta	Blautia	0.9528
Prevotella oris	Prevotella	0.9149
Clostridium isatidis	Clostridium	0.9011
Bacteroides acidifaciens	Bacteroides	0.8681
Treponema brennaborense	Treponema	0.7233
Paludibacter propionicigenes	Paludibacter	0.7090
Commensalibacter intestini	Commensalibacter	0.6801
Bacteroides cellulosilyticus	Bacteroides	0.6773
Clostridium cellulovorans	Clostridium	0.6078
Clostridium septicum	Clostridium	0.6027
Prevotella melaninogenica	Prevotella	0.5875
Treponema bryantii	Treponema	0.5498
Prevotella ruminicola	Prevotella	0.5163
Bacteroides mediterraneensis	Bacteroides	0.5059
Butyricicoccus pullicaecorum	Butyricicoccus	0.5055
Prevotella brevis	Prevotella	0.4905
Prevotella veroralis	Prevotella	0.4558
Prevotella denticola	Prevotella	0.4296
Clostridium beijerinckii	Clostridium	0.4258
Prevotella dentalis	Prevotella	0.4242
Clostridium thermosuccinogenes	Clostridium	0.4195

Saved public metadata

{
  "run_accession": "SRR23225845",
  "study_accession": "PRJNA926923",
  "sample_accession": "SAMN32886332",
  "instrument_platform": "OXFORD_NANOPORE",
  "instrument_model": "MinION",
  "library_strategy": "AMPLICON",
  "library_source": "OTHER",
  "library_selection": "PCR",
  "read_count": "17370",
  "base_count": "24627096",
  "fastq_bytes": "19985124",
  "fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/045/SRR23225845/SRR23225845_1.fastq.gz",
  "sample_title": "BTB02",
  "scientific_name": "gut metagenome"
}

Public files

SRR23225845_1.fastq.gz

Analysis provenance

{
  "marker": "16S",
  "pipeline": "Archaions v18.8",
  "cohort": "Gut, mixed hosts; not curated as a human-only cohort",
  "execution_state": "paused_by_user",
  "sample_state": "complete",
  "read_sampling": "First available reads; not random subsampling",
  "input_sha256": "1c0729486fd9871390bc7896713252ae34bb317e850d9a9ff4d4fde150c322f9",
  "length_window_bp": [
    1200,
    2000
  ],
  "median_read_length": 1482.0,
  "quality_scores": "No measured quality scores in fetched FASTA",
  "classifier_stats": {
    "marker": "16s",
    "pipeline": "v18.8",
    "gpu": "RTX-PRO-6000",
    "input_path": "volume-fastq-gz",
    "reads_in": 17370,
    "reads_skipped": 10272,
    "elapsed_seconds": 1.2778765599996404,
    "reads_submitted": 17370,
    "reads_after_filter": 17370,
    "adapter_scan": {
      "sampled": 200,
      "matched": 0,
      "fraction": 0.0,
      "adapters_found": {},
      "should_trim": false
    },
    "porechop_ran": false,
    "porechop_reason": "fast-path: no adapter trimming required"
  },
  "metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}