SRR23225836 · Gut microbiome
KPE05
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella copri | Prevotella | 18.6846 |
| Faecalibacterium prausnitzii | Faecalibacterium | 15.6858 |
| Prevotella ruminicola | Prevotella | 13.5052 |
| Muribaculum intestinale | Muribaculum | 6.6982 |
| Prevotella stercorea | Prevotella | 5.2209 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 4.2241 |
| Dysosmobacter welbionis | Dysosmobacter | 4.0053 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 3.2630 |
| Prevotella saccharolytica | Prevotella | 2.4692 |
| Butyricicoccus faecihominis | Butyricicoccus | 2.3124 |
| Treponema succinifaciens | Treponema | 2.2089 |
| Prevotella fusca | Prevotella | 2.1542 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 2.0065 |
| Prevotella oris | Prevotella | 1.8545 |
| Prevotella brevis | Prevotella | 1.5734 |
| Prevotella jejuni | Prevotella | 1.5627 |
| Prevotella oulorum | Prevotella | 1.5490 |
| Prevotella heparinolytica | Prevotella | 1.4752 |
| Prevotella buccalis | Prevotella | 1.1329 |
| Roseburia hominis | Roseburia | 1.0395 |
| Treponema brennaborense | Treponema | 0.8916 |
| Prevotella melaninogenica | Prevotella | 0.8657 |
| Prevotella dentalis | Prevotella | 0.7146 |
| Prevotella shahii | Prevotella | 0.6958 |
| Anaerotignum faecicola | Anaerotignum | 0.6387 |
| Roseburia intestinalis | Roseburia | 0.6371 |
| Campylobacter avium | Campylobacter | 0.6254 |
| Anaerostipes hadrus | Anaerostipes | 0.5722 |
| Prevotella scopos | Prevotella | 0.5098 |
| Prevotella denticola | Prevotella | 0.4467 |
| Prevotella bivia | Prevotella | 0.4309 |
| Prevotella nigrescens | Prevotella | 0.3460 |
Saved public metadata
{
"run_accession": "SRR23225836",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886305",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "25275",
"base_count": "36751439",
"fastq_bytes": "29731152",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/036/SRR23225836/SRR23225836_1.fastq.gz",
"sample_title": "KPE05",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "3329aff7a08107f57246349bdc4dab0981b79ba888d43370ba658dc8c8b01c44",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1484.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 12414,
"elapsed_seconds": 1.4195330659999854,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}