SRR23225835 · Gut microbiome
BTB11
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella copri | Prevotella | 15.8875 |
| Sarcina maxima | Sarcina | 14.8745 |
| Faecalibacterium prausnitzii | Faecalibacterium | 10.9711 |
| Prevotella stercorea | Prevotella | 7.3897 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 7.3646 |
| Paraprevotella xylaniphila | Paraprevotella | 5.7411 |
| Dysosmobacter welbionis | Dysosmobacter | 5.0467 |
| Treponema succinifaciens | Treponema | 3.5183 |
| Muribaculum intestinale | Muribaculum | 3.4022 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 3.3540 |
| Victivallis vadensis | Victivallis | 2.8359 |
| Blautia glucerasea | Blautia | 1.5718 |
| Prevotella jejuni | Prevotella | 1.5659 |
| Prevotella oulorum | Prevotella | 1.4329 |
| Prevotella ruminicola | Prevotella | 1.2379 |
| Prevotella oris | Prevotella | 1.0193 |
| Treponema brennaborense | Treponema | 0.9490 |
| Prevotella saccharolytica | Prevotella | 0.8529 |
| Dialister hominis | Dialister | 0.8291 |
| Prevotella heparinolytica | Prevotella | 0.7973 |
| Prevotella brevis | Prevotella | 0.7629 |
| Prevotella melaninogenica | Prevotella | 0.6920 |
| Prevotella loescheii | Prevotella | 0.6691 |
| Sarcina ventriculi | Sarcina | 0.6626 |
| Carboxylicivirga flava | Carboxylicivirga | 0.6390 |
| Prevotella fusca | Prevotella | 0.6218 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 0.5410 |
| Blautia producta | Blautia | 0.5285 |
| Prevotella oryzae | Prevotella | 0.4089 |
| Roseburia hominis | Roseburia | 0.4078 |
| Christensenella timonensis | Christensenella | 0.3965 |
| Butyricicoccus faecihominis | Butyricicoccus | 0.3722 |
| Prevotella shahii | Prevotella | 0.3644 |
| Prevotella dentalis | Prevotella | 0.3505 |
| Carboxylicivirga taeanensis | Carboxylicivirga | 0.3344 |
| Prevotella veroralis | Prevotella | 0.3269 |
| Fenollaria massiliensis | Fenollaria | 0.3244 |
| Roseburia intestinalis | Roseburia | 0.3036 |
| Treponema bryantii | Treponema | 0.2911 |
| Geobacter pickeringii | Geobacter | 0.2043 |
| Helicobacter fennelliae | Helicobacter | 0.1562 |
Saved public metadata
{
"run_accession": "SRR23225835",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886341",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "18327",
"base_count": "26393498",
"fastq_bytes": "21224712",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/035/SRR23225835/SRR23225835_1.fastq.gz",
"sample_title": "BTB11",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "374c369e3b4ebf827fc58c9f2f4494f771608a93f3c67d0b5828e5ddb7e3a3ee",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1481,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 18327,
"reads_skipped": 9925,
"elapsed_seconds": 1.2259611670000368,
"reads_submitted": 18327,
"reads_after_filter": 18327,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}