SRR23225833 · Gut microbiome
BTB13
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella copri | Prevotella | 18.5084 |
| Faecalibacterium prausnitzii | Faecalibacterium | 17.4740 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 8.9336 |
| Prevotella stercorea | Prevotella | 6.9180 |
| Treponema succinifaciens | Treponema | 6.4291 |
| Muribaculum intestinale | Muribaculum | 5.4782 |
| Treponema brennaborense | Treponema | 4.0834 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 4.0260 |
| Clostridium saudiense | Clostridium | 3.0031 |
| Prevotella ruminicola | Prevotella | 2.8842 |
| Prevotella jejuni | Prevotella | 1.9909 |
| Anaplasma marginale | Anaplasma | 1.9148 |
| Prevotella oulorum | Prevotella | 1.8441 |
| Prevotella oris | Prevotella | 1.6224 |
| Prevotella fusca | Prevotella | 1.2877 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 1.2554 |
| Carboxylicivirga flava | Carboxylicivirga | 1.1000 |
| Prevotella loescheii | Prevotella | 0.9442 |
| Prevotella heparinolytica | Prevotella | 0.9187 |
| Terrisporobacter mayombei | Terrisporobacter | 0.8623 |
| Prevotella brevis | Prevotella | 0.7994 |
| Roseburia hominis | Roseburia | 0.7346 |
| Clostridium isatidis | Clostridium | 0.7250 |
| Prevotella saccharolytica | Prevotella | 0.6828 |
| Prevotella shahii | Prevotella | 0.5975 |
| Prevotella melaninogenica | Prevotella | 0.5973 |
| Treponema bryantii | Treponema | 0.5831 |
| Prevotella oryzae | Prevotella | 0.5177 |
| Prevotella scopos | Prevotella | 0.4389 |
| Roseburia intestinalis | Roseburia | 0.4194 |
| Prevotella dentalis | Prevotella | 0.4049 |
| Carboxylicivirga taeanensis | Carboxylicivirga | 0.3710 |
| Prevotella veroralis | Prevotella | 0.3531 |
| Methylacidimicrobium tartarophylax | Methylacidimicrobium | 0.3424 |
| Fibrobacter succinogenes | Fibrobacter | 0.3424 |
| Prevotella bivia | Prevotella | 0.3077 |
| Klebsiella pneumoniae | Klebsiella | 0.3043 |
Saved public metadata
{
"run_accession": "SRR23225833",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886343",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "29341",
"base_count": "42297866",
"fastq_bytes": "34551087",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/033/SRR23225833/SRR23225833_1.fastq.gz",
"sample_title": "BTB13",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "4bc1773286cfe6baafcfa98ce3167e512da3b0bd85041a0766915e0c2f4c48eb",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 11972,
"elapsed_seconds": 1.490506163000191,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}