SRR23225830 · Gut microbiome
BTB16
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Clostridium saudiense | Clostridium | 13.2910 |
| Faecalibacterium prausnitzii | Faecalibacterium | 12.7733 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 10.5253 |
| Muribaculum intestinale | Muribaculum | 7.5257 |
| Prevotella copri | Prevotella | 7.2040 |
| Treponema succinifaciens | Treponema | 4.5503 |
| Prevotella fusca | Prevotella | 4.1586 |
| Paludibacter propionicigenes | Paludibacter | 3.0861 |
| Treponema brennaborense | Treponema | 2.6575 |
| Clostridium isatidis | Clostridium | 2.4536 |
| Terrisporobacter mayombei | Terrisporobacter | 2.1003 |
| Bacteroides uniformis | Bacteroides | 1.6736 |
| Carboxylicivirga flava | Carboxylicivirga | 1.6114 |
| Bacteroides gallinaceus | Bacteroides | 1.5802 |
| Prevotella jejuni | Prevotella | 1.5487 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 1.4739 |
| Prevotella stercorea | Prevotella | 1.4374 |
| Bacteroides mediterraneensis | Bacteroides | 1.4253 |
| Sphaerochaeta globosa | Sphaerochaeta | 1.3343 |
| Fenollaria massiliensis | Fenollaria | 1.3287 |
| Sphaerochaeta coccoides | Sphaerochaeta | 1.2735 |
| Prevotella dentasini | Prevotella | 1.2542 |
| Clostridium cellulovorans | Clostridium | 1.1994 |
| Prevotella heparinolytica | Prevotella | 1.1163 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 1.0906 |
| Bacteroides clarus | Bacteroides | 1.0852 |
| Bacteroides cellulosilyticus | Bacteroides | 1.0761 |
| Prevotella denticola | Prevotella | 1.0049 |
| Methylacidimicrobium cyclopophantes | Methylacidimicrobium | 0.9264 |
| Prevotella oulorum | Prevotella | 0.8917 |
| Bacteroides fragilis | Bacteroides | 0.8324 |
| Clostridium beijerinckii | Clostridium | 0.7157 |
| Prevotella brevis | Prevotella | 0.6756 |
| Bacteroides caecicola | Bacteroides | 0.6075 |
| Bacteroides fluxus | Bacteroides | 0.5414 |
| Prevotella oryzae | Prevotella | 0.5379 |
| Treponema bryantii | Treponema | 0.5144 |
| Carboxylicivirga taeanensis | Carboxylicivirga | 0.5104 |
| Anaerostipes hadrus | Anaerostipes | 0.4072 |
Saved public metadata
{
"run_accession": "SRR23225830",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886346",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "17141",
"base_count": "24682508",
"fastq_bytes": "19908844",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/030/SRR23225830/SRR23225830_1.fastq.gz",
"sample_title": "BTB16",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "b7201b7d65150f39212fc2ea5ae1552b3845d8d122ea9fd4d48b6b48ea702925",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 17141,
"reads_skipped": 12323,
"elapsed_seconds": 1.1516078189999917,
"reads_submitted": 17141,
"reads_after_filter": 17141,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}