SRR23225827 · Gut microbiome
BTB19
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella copri | Prevotella | 28.0031 |
| Clostridium saudiense | Clostridium | 10.5934 |
| Treponema succinifaciens | Treponema | 8.3620 |
| Christensenella minuta | Christensenella | 4.9632 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 4.2745 |
| Succinivibrio dextrinosolvens | Succinivibrio | 4.1810 |
| Prevotella jejuni | Prevotella | 3.6627 |
| Dialister hominis | Dialister | 3.1501 |
| Clostridium isatidis | Clostridium | 3.0664 |
| Carboxylicivirga flava | Carboxylicivirga | 2.2974 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 2.0542 |
| Prevotella stercorea | Prevotella | 1.8339 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 1.6037 |
| Collinsella aerofaciens | Collinsella | 1.5464 |
| Intestinibacter bartlettii | Intestinibacter | 1.4891 |
| Eshraghiella crossota | Eshraghiella | 1.4891 |
| Christensenella timonensis | Christensenella | 1.4281 |
| Prevotella ruminicola | Prevotella | 1.3844 |
| Christensenella massiliensis | Christensenella | 1.3692 |
| Prevotella oulorum | Prevotella | 1.3318 |
| Prevotella oris | Prevotella | 1.1274 |
| Prevotella fusca | Prevotella | 1.1259 |
| Roseburia hominis | Roseburia | 1.0947 |
| Roseburia intestinalis | Roseburia | 0.9385 |
| Prevotella loescheii | Prevotella | 0.9297 |
| Gemmiger formicilis | Gemmiger | 0.8597 |
| Subdoligranulum variabile | Subdoligranulum | 0.8299 |
| Prevotella veroralis | Prevotella | 0.7874 |
| Prevotella oryzae | Prevotella | 0.7721 |
| Carboxylicivirga taeanensis | Carboxylicivirga | 0.7381 |
| Prevotella scopos | Prevotella | 0.7159 |
| Geobacter pickeringii | Geobacter | 0.7158 |
| Geobacter metallireducens | Geobacter | 0.6587 |
| Prevotella melaninogenica | Prevotella | 0.6223 |
Saved public metadata
{
"run_accession": "SRR23225827",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886349",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "15082",
"base_count": "21713237",
"fastq_bytes": "17553879",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/027/SRR23225827/SRR23225827_1.fastq.gz",
"sample_title": "BTB19",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "3320663ab8fc15e3e15ee3bc5c7f5ca81adaf873dc8c90c3734568ceb61e2f18",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 15082,
"reads_skipped": 11382,
"elapsed_seconds": 1.1058461969996642,
"reads_submitted": 15082,
"reads_after_filter": 15082,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}