SRR23225825 · Gut microbiome
KPE06
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 16.0962 |
| Prevotella copri | Prevotella | 11.2339 |
| Prevotella ruminicola | Prevotella | 11.0507 |
| Prevotella saccharolytica | Prevotella | 6.5277 |
| Hominimerdicola aceti | Hominimerdicola | 4.7231 |
| Ruminococcus champanellensis | Ruminococcus | 4.5638 |
| Treponema succinifaciens | Treponema | 4.3287 |
| Prevotella stercorea | Prevotella | 4.1988 |
| Muribaculum intestinale | Muribaculum | 3.3073 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 2.9827 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 2.8969 |
| Prevotella oris | Prevotella | 2.7440 |
| Prevotella buccalis | Prevotella | 2.6266 |
| Treponema brennaborense | Treponema | 2.2826 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 2.2010 |
| Hominimerdicola alba | Hominimerdicola | 2.0044 |
| Terasakiella brassicae | Terasakiella | 1.6632 |
| Prevotella shahii | Prevotella | 1.2574 |
| Prevotella brevis | Prevotella | 1.1224 |
| Prevotella jejuni | Prevotella | 0.9977 |
| Roseburia hominis | Roseburia | 0.9432 |
| Butyricicoccus faecihominis | Butyricicoccus | 0.9284 |
| Prevotella melaninogenica | Prevotella | 0.8991 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.8732 |
| Prevotella fusca | Prevotella | 0.8012 |
| Roseburia intestinalis | Roseburia | 0.7754 |
| Prevotella oulorum | Prevotella | 0.7578 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 0.7346 |
| Prevotella heparinolytica | Prevotella | 0.7069 |
| Anaerotignum faecicola | Anaerotignum | 0.6514 |
| Fibrobacter succinogenes | Fibrobacter | 0.5960 |
| Prevotella dentalis | Prevotella | 0.5260 |
| Prevotella albensis | Prevotella | 0.5210 |
| Prevotella bivia | Prevotella | 0.4006 |
| Prevotella oryzae | Prevotella | 0.3965 |
| Prevotella denticola | Prevotella | 0.3829 |
| Prevotella nigrescens | Prevotella | 0.2970 |
Saved public metadata
{
"run_accession": "SRR23225825",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886306",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "23508",
"base_count": "33983587",
"fastq_bytes": "27760439",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/025/SRR23225825/SRR23225825_1.fastq.gz",
"sample_title": "KPE06",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "d39817d416fa80011823cf1d0656d267833139478e9bc41c0745bab4aea1f229",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 12714,
"elapsed_seconds": 1.2742710359999592,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"1492R_rc": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}