SRR23225824 · Gut microbiome
BTB21
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 12.5354 |
| Prevotella fusca | Prevotella | 10.6710 |
| Sphaerochaeta globosa | Sphaerochaeta | 8.0866 |
| Clostridium phytofermentans | Clostridium | 6.9184 |
| Prevotella copri | Prevotella | 5.2855 |
| Sphaerochaeta coccoides | Sphaerochaeta | 5.1652 |
| Cellulosilyticum lentocellum | Cellulosilyticum | 4.8510 |
| Methylacidimicrobium cyclopophantes | Methylacidimicrobium | 4.5901 |
| Clostridium saccharoperbutylacetonicum | Clostridium | 4.1571 |
| Succinivibrio dextrinosolvens | Succinivibrio | 3.6627 |
| Bacteroides gallinaceus | Bacteroides | 3.0654 |
| Bacteroides uniformis | Bacteroides | 2.8701 |
| Clostridium saudiense | Clostridium | 2.3382 |
| Prevotella denticola | Prevotella | 2.3000 |
| Prevotella dentasini | Prevotella | 2.2517 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 2.1646 |
| Thermus oshimai | Thermus | 1.8324 |
| Bacteroides fluxus | Bacteroides | 1.5683 |
| Bacteroides cellulosilyticus | Bacteroides | 1.5645 |
| Clostridium beijerinckii | Clostridium | 1.3673 |
| Christensenella timonensis | Christensenella | 1.3434 |
| Thermus thermophilus | Thermus | 1.1151 |
| Clostridium tarantellae | Clostridium | 0.9116 |
| Prevotella heparinolytica | Prevotella | 0.8598 |
| Intestinibacter bartlettii | Intestinibacter | 0.8465 |
| Desulfovibrio fairfieldensis | Desulfovibrio | 0.8184 |
| Prevotella jejuni | Prevotella | 0.8166 |
| Prevotella stercorea | Prevotella | 0.8133 |
| Prevotella brevis | Prevotella | 0.8015 |
| Bacteroides caecicola | Bacteroides | 0.6637 |
| Christensenella massiliensis | Christensenella | 0.5929 |
| Bacteroides helcogenes | Bacteroides | 0.5893 |
| Bacteroides zoogleoformans | Bacteroides | 0.5366 |
| Fenollaria massiliensis | Fenollaria | 0.4884 |
| Desulfovibrio piger | Desulfovibrio | 0.4676 |
| Thermus caliditerrae | Thermus | 0.4384 |
| Sphaerochaeta pleomorpha | Sphaerochaeta | 0.3582 |
| Clostridium carnis | Clostridium | 0.2930 |
Saved public metadata
{
"run_accession": "SRR23225824",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886351",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "26167",
"base_count": "37706536",
"fastq_bytes": "30050166",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/024/SRR23225824/SRR23225824_1.fastq.gz",
"sample_title": "BTB21",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "229726dc0c5acb5e71d0f212e4191dc596737a18262bfce0e57f318c6be38d27",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 13727,
"elapsed_seconds": 1.319149914000036,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"27F": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}