SRR23225823 · Gut microbiome
BTB22
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella copri | Prevotella | 29.4759 |
| Faecalibacterium prausnitzii | Faecalibacterium | 12.8637 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 10.1076 |
| Prevotella stercorea | Prevotella | 6.2676 |
| Treponema succinifaciens | Treponema | 4.5426 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 3.9179 |
| Blautia glucerasea | Blautia | 3.7270 |
| Prevotella oryzae | Prevotella | 2.3961 |
| Prevotella jejuni | Prevotella | 2.1947 |
| Prevotella oulorum | Prevotella | 2.0139 |
| Prevotella fusca | Prevotella | 1.7136 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 1.6968 |
| Prevotella oris | Prevotella | 1.5897 |
| Prevotella melaninogenica | Prevotella | 1.3941 |
| Blautia producta | Blautia | 1.2280 |
| Anaerovibrio lipolyticus | Anaerovibrio | 1.2142 |
| Muribaculum intestinale | Muribaculum | 1.1408 |
| Prevotella ruminicola | Prevotella | 0.9978 |
| Roseburia intestinalis | Roseburia | 0.8861 |
| Dialister hominis | Dialister | 0.8059 |
| Roseburia inulinivorans | Roseburia | 0.8051 |
| Roseburia hominis | Roseburia | 0.6639 |
| Prevotella dentalis | Prevotella | 0.6550 |
| Prevotella brevis | Prevotella | 0.6457 |
| Prevotella loescheii | Prevotella | 0.6447 |
| Prevotella scopos | Prevotella | 0.5270 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.4710 |
| Prevotella veroralis | Prevotella | 0.4658 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 0.4649 |
| Blautia hansenii | Blautia | 0.4563 |
| Prevotella buccalis | Prevotella | 0.4243 |
| Butyricicoccus faecihominis | Butyricicoccus | 0.4187 |
| Prevotella shahii | Prevotella | 0.3585 |
| Prevotella bryantii | Prevotella | 0.3434 |
| Coprococcus eutactus | Coprococcus | 0.3349 |
| Methylacidimicrobium tartarophylax | Methylacidimicrobium | 0.3096 |
| Prevotella dentasini | Prevotella | 0.3055 |
| Prevotella heparinolytica | Prevotella | 0.2831 |
| Prevotella paludivivens | Prevotella | 0.2817 |
| Prevotella bivia | Prevotella | 0.2625 |
| Agathobaculum desmolans | Agathobaculum | 0.2500 |
| Prevotella denticola | Prevotella | 0.2345 |
| Fibrobacter succinogenes | Fibrobacter | 0.2198 |
Saved public metadata
{
"run_accession": "SRR23225823",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886352",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "25184",
"base_count": "36379379",
"fastq_bytes": "29156209",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/023/SRR23225823/SRR23225823_1.fastq.gz",
"sample_title": "BTB22",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "0ad17b27dbc17abd90f0c1e61e3a7972fe1a2c71cad74502a28f40e3631b17f8",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1484.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 10374,
"elapsed_seconds": 1.4559100070000568,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}