SRR23225819 · Gut microbiome
BTB26
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 26.8448 |
| Prevotella copri | Prevotella | 22.9073 |
| Prevotella stercorea | Prevotella | 15.5513 |
| Blautia glucerasea | Blautia | 3.8356 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 3.6838 |
| Dysosmobacter welbionis | Dysosmobacter | 3.3128 |
| Sarcina maxima | Sarcina | 2.3739 |
| Prevotella jejuni | Prevotella | 2.0142 |
| Prevotella oris | Prevotella | 1.8765 |
| Anaerovibrio lipolyticus | Anaerovibrio | 1.5799 |
| Prevotella oulorum | Prevotella | 1.3035 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 1.2886 |
| Blautia producta | Blautia | 1.2853 |
| Anaerobutyricum hallii | Anaerobutyricum | 1.1709 |
| Muribaculum intestinale | Muribaculum | 1.0229 |
| Prevotella ruminicola | Prevotella | 0.8418 |
| Prevotella loescheii | Prevotella | 0.7740 |
| Prevotella melaninogenica | Prevotella | 0.7525 |
| Prevotella brevis | Prevotella | 0.7350 |
| Prevotella oryzae | Prevotella | 0.5457 |
| Prevotella saccharolytica | Prevotella | 0.5333 |
| Collinsella aerofaciens | Collinsella | 0.5053 |
| Prevotella fusca | Prevotella | 0.4371 |
| Anaerostipes hadrus | Anaerostipes | 0.4251 |
| Prevotella dentalis | Prevotella | 0.3795 |
| Prevotella buccalis | Prevotella | 0.3541 |
| Prevotella bivia | Prevotella | 0.3476 |
| Agathobaculum desmolans | Agathobaculum | 0.3288 |
| Prevotella scopos | Prevotella | 0.3238 |
| Treponema brennaborense | Treponema | 0.3143 |
| Prevotella shahii | Prevotella | 0.2966 |
| Prevotella heparinolytica | Prevotella | 0.2680 |
| Prevotella denticola | Prevotella | 0.2651 |
| Prevotella paludivivens | Prevotella | 0.2632 |
| Blautia hansenii | Blautia | 0.2524 |
| Subdoligranulum variabile | Subdoligranulum | 0.2218 |
| Treponema succinifaciens | Treponema | 0.2150 |
| Prevotella veroralis | Prevotella | 0.2110 |
| Prevotella nigrescens | Prevotella | 0.1925 |
| Prevotella colorans | Prevotella | 0.1655 |
Saved public metadata
{
"run_accession": "SRR23225819",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886356",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "26219",
"base_count": "37816985",
"fastq_bytes": "29676112",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/019/SRR23225819/SRR23225819_1.fastq.gz",
"sample_title": "BTB26",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "574e0d3675c273acc17b6dbe091f5f28042abbd1e0cff412690700754cccf576",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1480.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 7460,
"elapsed_seconds": 1.5133997279999676,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"BC_FLANK": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}