SRR23225817 · Gut microbiome
BTB28
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella copri | Prevotella | 18.2706 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 16.3276 |
| Faecalibacterium prausnitzii | Faecalibacterium | 10.8956 |
| Dysosmobacter welbionis | Dysosmobacter | 9.1889 |
| Prevotella stercorea | Prevotella | 6.6980 |
| Ruminobacter amylophilus | Ruminobacter | 4.5762 |
| Treponema bryantii | Treponema | 4.5194 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 4.4186 |
| Ruminococcus champanellensis | Ruminococcus | 2.9232 |
| Ruminococcus callidus | Ruminococcus | 1.8816 |
| Blautia glucerasea | Blautia | 1.7709 |
| Prevotella oryzae | Prevotella | 1.7060 |
| Prevotella oulorum | Prevotella | 1.4317 |
| Blautia producta | Blautia | 1.3997 |
| Treponema succinifaciens | Treponema | 1.3694 |
| Prevotella jejuni | Prevotella | 1.3077 |
| Muribaculum intestinale | Muribaculum | 1.1414 |
| Prevotella fusca | Prevotella | 1.0650 |
| Prevotella oris | Prevotella | 1.0192 |
| Treponema brennaborense | Treponema | 1.0020 |
| Succinivibrio dextrinosolvens | Succinivibrio | 0.8244 |
| Roseburia hominis | Roseburia | 0.6458 |
| Eshraghiella crossota | Eshraghiella | 0.6235 |
| Prevotella ruminicola | Prevotella | 0.5621 |
| Prevotella loescheii | Prevotella | 0.4120 |
| Ruminococcus bromii | Ruminococcus | 0.4014 |
| Prevotella melaninogenica | Prevotella | 0.3863 |
| Prevotella dentalis | Prevotella | 0.3807 |
| Prevotella brevis | Prevotella | 0.3696 |
| Prevotella scopos | Prevotella | 0.3437 |
| Intestinibacter bartlettii | Intestinibacter | 0.3382 |
| Prevotella veroralis | Prevotella | 0.3144 |
| Roseburia intestinalis | Roseburia | 0.3054 |
| Prevotella bivia | Prevotella | 0.2673 |
| Roseburia inulinivorans | Roseburia | 0.2642 |
| Prevotella paludivivens | Prevotella | 0.2378 |
| Geobacter pickeringii | Geobacter | 0.2219 |
| Carboxylicivirga flava | Carboxylicivirga | 0.1889 |
Saved public metadata
{
"run_accession": "SRR23225817",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886358",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "21948",
"base_count": "31455086",
"fastq_bytes": "25019791",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/017/SRR23225817/SRR23225817_1.fastq.gz",
"sample_title": "BTB28",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "499018bed5bcea9a558b9c7e51d03db8f92461cf0882acfd0eefb74e33c5894c",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 10486,
"elapsed_seconds": 1.3339973890001602,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"27F": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}