SRR23225816 · Gut microbiome
BTB29
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 20.2707 |
| Muribaculum intestinale | Muribaculum | 12.6901 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 8.6372 |
| Dysosmobacter welbionis | Dysosmobacter | 7.8988 |
| Prevotella copri | Prevotella | 7.4174 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 4.7923 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 4.1345 |
| Carboxylicivirga flava | Carboxylicivirga | 3.3063 |
| Blautia glucerasea | Blautia | 2.8021 |
| Prevotella stercorea | Prevotella | 2.7512 |
| Butyricicoccus faecihominis | Butyricicoccus | 2.5531 |
| Sphaerochaeta globosa | Sphaerochaeta | 2.1596 |
| Ruminococcus champanellensis | Ruminococcus | 1.9784 |
| Blautia producta | Blautia | 1.7245 |
| Bacteroides uniformis | Bacteroides | 1.0805 |
| Sphaerochaeta coccoides | Sphaerochaeta | 1.0795 |
| Prevotella fusca | Prevotella | 1.0617 |
| Anaerobutyricum hallii | Anaerobutyricum | 1.0502 |
| Prevotella jejuni | Prevotella | 1.0014 |
| Bacteroides caecicola | Bacteroides | 0.8518 |
| Ruminococcus callidus | Ruminococcus | 0.8343 |
| Carboxylicivirga taeanensis | Carboxylicivirga | 0.8278 |
| Prevotella oryzae | Prevotella | 0.8188 |
| Bacteroides cellulosilyticus | Bacteroides | 0.7264 |
| Prevotella oris | Prevotella | 0.7218 |
| Commensalibacter intestini | Commensalibacter | 0.6961 |
| Bacteroides gallinaceus | Bacteroides | 0.6229 |
| Prevotella dentasini | Prevotella | 0.6171 |
| Prevotella loescheii | Prevotella | 0.5903 |
| Bacteroides fluxus | Bacteroides | 0.5332 |
| Prevotella oulorum | Prevotella | 0.5313 |
| Prevotella brevis | Prevotella | 0.5255 |
| Prevotella heparinolytica | Prevotella | 0.4274 |
| Gemmiger formicilis | Gemmiger | 0.4253 |
| Blautia hansenii | Blautia | 0.4173 |
| Eshraghiella crossota | Eshraghiella | 0.3995 |
| Ruminococcus bromii | Ruminococcus | 0.3855 |
| Geobacter metallireducens | Geobacter | 0.3410 |
| Prevotella denticola | Prevotella | 0.3171 |
Saved public metadata
{
"run_accession": "SRR23225816",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886359",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "31417",
"base_count": "45179737",
"fastq_bytes": "36123139",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/016/SRR23225816/SRR23225816_1.fastq.gz",
"sample_title": "BTB29",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "0cbb23fa53d54ada128eb26a41f10f8f052e5fae0aa317124637124d55e32e51",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 12894,
"elapsed_seconds": 1.2593313339999668,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 2,
"fraction": 0.01,
"adapters_found": {
"BC_FLANK": 2
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}