SRR23225811 · Gut microbiome
MFRC03
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Stenotrophomonas maltophilia | Stenotrophomonas | 72.1877 |
| Comamonas testosteroni | Comamonas | 4.8097 |
| Pseudomonas putida | Pseudomonas | 2.5750 |
| Sphaerochaeta coccoides | Sphaerochaeta | 1.8611 |
| Comamonas terrigena | Comamonas | 1.8595 |
| Stenotrophomonas ginsengisoli | Stenotrophomonas | 1.8141 |
| Comamonas kerstersii | Comamonas | 1.5207 |
| Pseudomonas citronellolis | Pseudomonas | 1.2615 |
| Brevundimonas diminuta | Brevundimonas | 1.2541 |
| Comamonas phosphati | Comamonas | 1.1096 |
| Clostridium sardiniense | Clostridium | 1.0404 |
| Stenotrophomonas nitritireducens | Stenotrophomonas | 0.9707 |
| Bacteroides gallinaceus | Bacteroides | 0.7211 |
| Sphaerochaeta globosa | Sphaerochaeta | 0.7028 |
| Clostridium baratii | Clostridium | 0.6221 |
| Terrisporobacter mayombei | Terrisporobacter | 0.6109 |
| Delftia tsuruhatensis | Delftia | 0.5954 |
| Roseateles chitosanitabidus | Roseateles | 0.4907 |
| Brevundimonas naejangsanensis | Brevundimonas | 0.4385 |
| Clostridium saudiense | Clostridium | 0.4006 |
| Pseudomonas aeruginosa | Pseudomonas | 0.3628 |
| Christensenella minuta | Christensenella | 0.3605 |
| Pseudomonas monteilii | Pseudomonas | 0.3329 |
| Pseudomonas mosselii | Pseudomonas | 0.3136 |
| Muribaculum intestinale | Muribaculum | 0.3004 |
| Pseudomonas denitrificans (nom. rej.) | 0.2921 | |
| Pseudomonas plecoglossicida | Pseudomonas | 0.2737 |
| Solibacillus silvestris | Solibacillus | 0.2704 |
| Pseudomonas alcaligenes | Pseudomonas | 0.2504 |
| Pseudomonas knackmussii | Pseudomonas | 0.2169 |
| Acinetobacter cumulans | Acinetobacter | 0.1803 |
Saved public metadata
{
"run_accession": "SRR23225811",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886363",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "13967",
"base_count": "20440731",
"fastq_bytes": "14923547",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/011/SRR23225811/SRR23225811_1.fastq.gz",
"sample_title": "MFRC03",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "bb391d6b666a0390e50ece645eba36d0f6592c287b0974cf86dc71c4c27c6cb2",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1495,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 13967,
"reads_skipped": 3798,
"elapsed_seconds": 1.329237271999773,
"reads_submitted": 13967,
"reads_after_filter": 13967,
"adapter_scan": {
"sampled": 200,
"matched": 58,
"fraction": 0.29,
"adapters_found": {
"BC_FLANK": 58
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}