SRR23225810 · Gut microbiome
MFRC04
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Clostridium sardiniense | Clostridium | 19.0051 |
| Clostridium paraputrificum | Clostridium | 16.6595 |
| Clostridium baratii | Clostridium | 11.0854 |
| Clostridium beijerinckii | Clostridium | 10.8326 |
| Hominimerdicola aceti | Hominimerdicola | 8.6318 |
| Roseburia hominis | Roseburia | 7.3840 |
| Intestinibacter bartlettii | Intestinibacter | 4.0616 |
| Lysinibacillus sphaericus | Lysinibacillus | 3.0173 |
| Anaerobutyricum hallii | Anaerobutyricum | 1.9217 |
| Rummeliibacillus stabekisii | Rummeliibacillus | 1.3812 |
| Hominimerdicola alba | Hominimerdicola | 1.3368 |
| Blautia glucerasea | Blautia | 1.2857 |
| Clostridium budayi | Clostridium | 1.2249 |
| Ruminococcus champanellensis | Ruminococcus | 1.1462 |
| Clostridium carnis | Clostridium | 1.0673 |
| Solibacillus silvestris | Solibacillus | 0.9513 |
| Blautia producta | Blautia | 0.9111 |
| Roseburia intestinalis | Roseburia | 0.8682 |
| Clostridium butyricum | Clostridium | 0.7547 |
| Kurthia zopfii | Kurthia | 0.6877 |
| Streptococcus gallolyticus | Streptococcus | 0.6223 |
| Clostridium cellulovorans | Clostridium | 0.4965 |
| Clostridium felsineum | Clostridium | 0.4764 |
| Clostridium saccharobutylicum | Clostridium | 0.4449 |
| Clostridium botulinum | Clostridium | 0.4292 |
| Lysinibacillus fusiformis | Lysinibacillus | 0.4076 |
| Clostridium septicum | Clostridium | 0.3908 |
| Clostridium moniliforme | Clostridium | 0.3253 |
| Blautia hansenii | Blautia | 0.3191 |
| Prevotella copri | Prevotella | 0.2948 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 0.2948 |
| Clostridium fallax | Clostridium | 0.2860 |
| Solibacillus isronensis | Solibacillus | 0.2825 |
| Kurthia gibsonii | Kurthia | 0.2491 |
| Roseburia faecis | Roseburia | 0.2373 |
| Clostridium merdae | Clostridium | 0.2293 |
Saved public metadata
{
"run_accession": "SRR23225810",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886364",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "11488",
"base_count": "16661428",
"fastq_bytes": "12261427",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/010/SRR23225810/SRR23225810_1.fastq.gz",
"sample_title": "MFRC04",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "984e21468a9d02ec98757b3dd560055116930447fdc1e695c7a8790f6032c65e",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1472.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 11488,
"reads_skipped": 2236,
"elapsed_seconds": 1.4660435939999843,
"reads_submitted": 11488,
"reads_after_filter": 11488,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}